Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016169.1 Corchorus olitorius cultivar O-4 contig16202, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24859

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5025--5066
20
2.2
20
83
12
52
40
19
11
28
1.87
5403--5447
14
3.5
12
84
9
54
31
0
11
57
1.33
6462--7400
72
13.0
72
82
6
967
46
11
17
25
1.80
6462--7347
109
8.2
109
87
4
1109
46
11
16
25
1.80
7234--7501
36
7.6
34
77
15
212
45
9
17
28
1.79
8486--8536
22
2.3
22
100
0
102
41
7
23
27
1.82
11115--11204
3
30.0
3
83
4
110
33
27
3
35
1.74
11445--11479
2
18.0
2
94
5
63
51
0
0
48
1.00
17129--18939
334
5.5
329
79
5
1855
32
15
15
35
1.90
19121--19408
43
6.8
42
88
4
436
41
27
10
21
1.85
19121--19408
84
3.4
84
92
1
470
41
27
10
21
1.85
19121--19408
127
2.3
126
92
4
465
41
27
10
21
1.85
19527--19553
2
13.5
2
100
0
54
51
0
0
48
1.00
19531--19573
14
3.1
14
86
0
50
51
16
0
32
1.45
20924--23716
332
8.5
330
78
8
2509
33
13
16
36
1.88
21001--23717
667
4.1
656
78
9
2222
32
13
16
36
1.88

Tables:   1

The End!