Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001617.1 Corchorus olitorius cultivar O-4 contig01617, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 657

Length: 1095
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.32


Found at i:409 original size:13 final size:13

Alignment explanation


    Indices: 391--420  Score: 51
    Period size: 13  Copynumber: 2.3  Consensus size: 13

        381 AACCGTTAAT

                         
        391 ATCAAAATCATAA
          1 ATCAAAATCATAA

                  *      
        404 ATCAAAGTCATAA
          1 ATCAAAATCATAA

                
        417 ATCA
          1 ATCA

        421 GAGTAAAACC


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  13   16  1.00

ACGTcount: A:0.57, C:0.17, G:0.03, T:0.23


Consensus pattern (13 bp):   
ATCAAAATCATAA

Found at i:1062 original size:2 final size:2

Alignment explanation


    Indices: 1055--1083  Score: 58
    Period size: 2  Copynumber: 14.5  Consensus size: 2

       1045 CTTCATTTAT

                                                       
       1055 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

       1084 TATTTTTTTT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   27  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Done.