Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01016172.1 Corchorus olitorius cultivar O-4 contig16205, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9200
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.33
Found at i:649 original size:20 final size:20
Alignment explanation
Indices: 603--648 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
593 AACAAAGTCC
603 TTTTTTTCAATGCTATAATT
1 TTTTTTTCAATGCTATAATT
* *
623 TTGTTTTCAATGCTGT-ATT
1 TTTTTTTCAATGCTATAATT
642 TTTTTTT
1 TTTTTTT
649 TGTTGTTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.17, C:0.09, G:0.09, T:0.65
Consensus pattern (20 bp):
TTTTTTTCAATGCTATAATT
Found at i:6402 original size:331 final size:327
Alignment explanation
Indices: 5507--6567 Score: 1284
Period size: 331 Copynumber: 3.2 Consensus size: 327
5497 AACAAACAAT
* * *
5507 TAGATATTTCAATGAGTGTTGGAGAAAAAAATCATGCAAAATTGAATCGGGGCTCCGGAACACGT
1 TAGATATTTCAATGAGTCTTGG-CAAAAAAATCATGCAAAATTGAATCGGGG-TCCGGAACGCGT
* * * * *
5572 TTTTAACCAAAAACTGTGATGGTTTA-TACACAATTTCGGCTAACATTTTGCACAAACTGACACA
64 TTTTAGCCAAAAACCGTGAT-G--TAGTACACAATTTCGGCTAAAATTTTGCA-AAAATGAC-CG
* * * *
5636 AAAGTTTTTCCCTCAATTTTTAGCCACAATAGTCATAAAAAATTATCTAATTCGACGCCAAAAAG
124 AAATTTTTTCTCTCAATTTTTAGCCACAATAGTCATAAAAAA-TATATAATTCAACGCCAAAAAG
* * *
5701 ATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCTATTTTTTTCTGAATTAA-TTCTGATTA
188 ATTAAAGGGCTTTTCACGCTTCCAATATCGTTTTTCCTATTTTTTTCTGAATTAATTTCTGATTA
5765 AATCGAAACATGATTCAGATGCTCATAAAAATAAATCCTTAAATCCAATGTGGCTGAGATTTGGT
253 AATCGAAACATGATTCAGATGCTCATAAAAATAAATCCTTAAATCCAATGTGGCTGAGATTTGGT
5830 TAGATGAATA
318 TAGATGAATA
* * *
5840 TAGATATTTCAATGAGTCTTGGCGCAAAAAAT-ATGCAAAACTGAA-CTGGGGTCCCGGAAAGCG
1 TAGATATTTCAATGAGTCTTGGC-AAAAAAATCATGCAAAATTGAATC-GGGGT-CCGGAACGCG
* * **
5903 TTTTTAG-CAAAAAGCCGTAATG--GTTACA-AGATTTCGGTTAAAATTTTGCAAAAACAAACCT
63 TTTTTAGCCAAAAA-CCGTGATGTAG-TACACA-ATTTCGGCTAAAATTTTGCAAAAA-TGACC-
* * * * * * *
5964 GAAATATTTTT-TCTCAAGTTTTGGCCACAATACTCATATAAAATATACAACTGAACGCCAAAAA
123 GAAAT-TTTTTCTCTCAATTTTTAGCCACAATAGTCATAAAAAATATATAATTCAACGCCAAAAA
* * * *
6028 GATTAAA-GGCTTTTTTCACGCTTTCAATATCATTTTCCCTATTTTTTT-TCGAATTAATTTCTA
187 GATTAAAGGGC--TTTTCACGCTTCCAATATCGTTTTTCCTATTTTTTTCT-GAATTAATTTCTG
* * *
6091 ATTAAATCGAAACATGATCCTA-ATGCTCATAAAAACAAATCATTAAATCCAATGTGGCTGAGAT
249 ATTAAATCGAAACATGATTC-AGATGCTCATAAAAATAAATCCTTAAATCCAATGTGGCTGAGA-
*
6155 TTTCGTTAGATGAATA
312 TTTGGTTAGATGAATA
* * *
6171 TAGATATTTCAATTAGTCTTGGAAATAAAAAATCATGCAAAATTGAGTCGGGGTCCGGAACGCGT
1 TAGATATTTCAATGAGTCTTGG-CA-AAAAAATCATGCAAAATTGAATCGGGGTCCGGAACGCGT
* ** *
6236 TTTTAGCCAAAAACCGTGATGTAGTACACTATTTTAGCTAAAATTTTACAAAAATTGATCCGAAA
64 TTTTAGCCAAAAACCGTGATGTAGTACACAATTTCGGCTAAAATTTTGCAAAAA-TGA-CCGAAA
6301 TTTTTTCTCTCAATTTTTAGCCACAATAGTCATAAAAAATATATAATTCAACG-CAAAAAGATTA
127 TTTTTTCTCTCAATTTTTAGCCACAATAGTCATAAAAAATATATAATTCAACGCCAAAAAGATTA
* *
6365 AAGGGCTTTTCACGCTTCCAATATCGTTTTTCCTATTTTTTCCTGAATTAATTTCTGATTAAATT
192 AAGGGCTTTTCACGCTTCCAATATCGTTTTTCCTATTTTTTTCTGAATTAATTTCTGATTAAATC
* * * *
6430 GAAACATGATTCAGATGCTCGTAAAAATAATTCCTTATATCCAATGTGGCTGAGGTTTGGTTAGA
257 GAAACATGATTCAGATGCTCATAAAAATAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGA
6495 TGAATA
322 TGAATA
* * ** *
6501 TAGATATTTTATTGAGTCTTGGCGGCAAAAATCATGCAAAATTGAACCGGGGTCGCGGAACGCGT
1 TAGATATTTCAATGAGTCTTGGC-AAAAAAATCATGCAAAATTGAATCGGGGTC-CGGAACGCGT
6566 TT
64 TT
6568 CGGCAAAAAT
Statistics
Matches: 616, Mismatches: 81, Indels: 65
0.81 0.11 0.09
Matches are distributed among these distances:
327 2 0.00
328 28 0.05
329 119 0.19
330 114 0.19
331 143 0.23
332 84 0.14
333 122 0.20
334 4 0.01
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (327 bp):
TAGATATTTCAATGAGTCTTGGCAAAAAAATCATGCAAAATTGAATCGGGGTCCGGAACGCGTTT
TTAGCCAAAAACCGTGATGTAGTACACAATTTCGGCTAAAATTTTGCAAAAATGACCGAAATTTT
TTCTCTCAATTTTTAGCCACAATAGTCATAAAAAATATATAATTCAACGCCAAAAAGATTAAAGG
GCTTTTCACGCTTCCAATATCGTTTTTCCTATTTTTTTCTGAATTAATTTCTGATTAAATCGAAA
CATGATTCAGATGCTCATAAAAATAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAA
TA
Found at i:7196 original size:620 final size:618
Alignment explanation
Indices: 5983--7196 Score: 1454
Period size: 620 Copynumber: 2.0 Consensus size: 618
5973 TTTCTCAAGT
* *
5983 TTTGGCCACAATACTCATATAAAATATACAACTGAACGCCAAAAAGATTAAAGGCTTTTTTCACG
1 TTTGGCCACAATACTCATATAAAATATACAACTCAACGCCAAAAAGATTAAAGGC-TTTTTCACA
* *
6048 CTTTCAATATCATTTTCCCTATTTTTTTTCGAATTAATTTCTAATTAAATCGAAACATGATCCTA
65 CTTTCAATATAATTTTCCC-ATTTTTTTTCGAATTAATTTCTAATGAAATCGAAACATGATCCTA
* *
6113 ATGCTCATAAAAACAAATCATTAAATCCAATGTGGCTGAGATTTTCGTTAGATGAATATAGATAT
129 ATACTCATAAAAACAAATCATTAAATCCAATGTGCCTGAGATTTTCGTTAGATGAATATAGATAT
* * * * *
6178 TTCAATTAGTCTTGGAAATAAAAAATCATGCAAAATTGAGTCGGGGTCCGGAACGCGTTTTTAGC
194 TTCAATAAGTCTTGGAAACAAAAAATCATGCAAAACTGACTCGGGGCCCGGAACGCGTTTTTAGC
* ** *
6243 CAAAAACCGTGATGTAGTACACTATTTTAGCTAAAATTTTACAAAAATTGATCCGAAATTTTTTC
259 AAAAAAAAGTGATGTAGTACACGATTTTAGCTAAAATTTTACAAAAATTGATCCGAAATTTTTTC
* * * *
6308 TCTCAATTTTTAGCCACAATAGTCATAAAAAATATATAATTCAACGCAAAAAGATTAAAGGGCTT
324 TCTCAATTTTTAGCCAAAATAATCATAAAAAATATATAATTCAACCCAAAAAGATTAAAGGACTT
* * * ** *
6373 TTCACGCTTCCAATATCGTTTTTCCTATTTTTTCCTGAATTAATTTCTGATTAAATTGAAACATG
389 TTCACGCTTCCAATATCATTTTTCCTATTTTTTCCTAAATTAATTTCTAATTAAATCAAAACAAG
* * * * * *
6438 ATTCAGATGCTCGTAAAAATAATTCCTTATATCCAATGTGGCTGAGGTTTGGTTAGATGAATATA
454 ATTCAGATGCTCATAAAAAAAATTCCTTAAATCCAATGTAGCTAAGATTTGGTTAGATGAATATA
* * * * * * *
6503 GATATTTTATTGAGTCTTGGCGGCAAAAATCATGCAAAATTGAACCGGGGTCGCGGAACGCGTTT
519 GATATTTCAATGAGTCTTGGCGGCAAAAATCATGCAAAACTAAACCAGGGCCGCAGAACGCGTTT
*
6568 CGGCAAAAATTGACCCGAAAAATACTTCCTCAATA
584 CAGCAAAAATTGACCCGAAAAATACTTCCTCAATA
* * * * *
6603 TTTGGCCACAATACTCGTA-AAATATATATAATTCAATGCCAAAAAGATTAAAGGGC-TTTTCAT
1 TTTGGCCACAATACTCATATAAA-ATATACAACTCAACGCCAAAAAGATTAAA-GGCTTTTTCAC
* * *
6666 AC-TTCTAATATAAATTTT-CC-TTTTTTTTCAGAATTAATTTCTAATGAATTTGAAACATGATT
64 ACTTTC-AATAT-AATTTTCCCATTTTTTTTC-GAATTAATTTCTAATGAAATCGAAACATGATC
* * *
6728 C-AGATACT-AGTAAAAACAAAT-ACTTAAATCTAATGTAGCCT-TGA-TTTGGTTAGATGAATA
126 CTA-ATACTCA-TAAAAACAAATCA-TTAAATCCAATGT-GCCTGAGATTTTCGTTAGATGAATA
** * *
6788 TAGATATTTCAATAAGT-TTGG-CGCCAAAAATCATGCAAAACTGACTCGGTGCCTCGGAACGCG
187 TAGATATTTCAATAAGTCTTGGAAACAAAAAATCATGCAAAACTGACTCGGGGCC-CGGAACGCG
* * **
6851 TTTTTCAGCAAAAAAAAAGTGATGGATATTACACGATTTTTGCTAAAATTTTGGAAAAATTGATC
251 TTTTT-AGC-AAAAAAAAGTGAT-G-TAGTACACGATTTTAGCTAAAATTTTACAAAAATTGATC
** *
6916 CGAAAGTTATTTTC-CTTGATTTTT-GGCAAAATAATCATAAAAAATATATAATTCAACACCAAA
312 CGAAA-TT-TTTTCTCTCAATTTTTAGCCAAAATAATCATAAAAAATATATAATTCAAC-CCAAA
* *** * * *
6979 AAGATTGAAGGACTTTTCACGCTTTTGATATCATTTTTCTTTTTTTTTCC-AAATTAATTTTTAA
374 AAGATTAAAGGACTTTTCACGCTTCCAATATCATTTTTCCTATTTTTTCCTAAATTAATTTCTAA
* *
7043 TTAAATCAAAACAAGATTCAGATTCTCATAAAAACAAATT-CTTAAATCCAATGTATCTAAGATT
439 TTAAATCAAAACAAGATTCAGATGCTCATAAAAA-AAATTCCTTAAATCCAATGTAGCTAAGATT
*
7107 TGGTTAGATGAATATAGATATTTCAATGAGT-TTGGCGGCAAAAATCATGCAAAACTAAACTAGG
503 TGGTTAGATGAATATAGATATTTCAATGAGTCTTGGCGGCAAAAATCATGCAAAACTAAACCAGG
* * *
7171 GCCTCAGAATGCGTTTTTAGCAAAAA
568 GCCGCAGAACGCG-TTTCAGCAAAAA
7197 AAACCGTGAT
Statistics
Matches: 501, Mismatches: 74, Indels: 38
0.82 0.12 0.06
Matches are distributed among these distances:
615 24 0.05
616 18 0.04
617 46 0.09
618 71 0.14
619 59 0.12
620 215 0.43
621 63 0.13
622 5 0.01
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34
Consensus pattern (618 bp):
TTTGGCCACAATACTCATATAAAATATACAACTCAACGCCAAAAAGATTAAAGGCTTTTTCACAC
TTTCAATATAATTTTCCCATTTTTTTTCGAATTAATTTCTAATGAAATCGAAACATGATCCTAAT
ACTCATAAAAACAAATCATTAAATCCAATGTGCCTGAGATTTTCGTTAGATGAATATAGATATTT
CAATAAGTCTTGGAAACAAAAAATCATGCAAAACTGACTCGGGGCCCGGAACGCGTTTTTAGCAA
AAAAAAGTGATGTAGTACACGATTTTAGCTAAAATTTTACAAAAATTGATCCGAAATTTTTTCTC
TCAATTTTTAGCCAAAATAATCATAAAAAATATATAATTCAACCCAAAAAGATTAAAGGACTTTT
CACGCTTCCAATATCATTTTTCCTATTTTTTCCTAAATTAATTTCTAATTAAATCAAAACAAGAT
TCAGATGCTCATAAAAAAAATTCCTTAAATCCAATGTAGCTAAGATTTGGTTAGATGAATATAGA
TATTTCAATGAGTCTTGGCGGCAAAAATCATGCAAAACTAAACCAGGGCCGCAGAACGCGTTTCA
GCAAAAATTGACCCGAAAAATACTTCCTCAATA
Found at i:7598 original size:332 final size:330
Alignment explanation
Indices: 6570--9199 Score: 2081
Period size: 333 Copynumber: 8.0 Consensus size: 330
6560 ACGCGTTTCG
* * * * * * *
6570 GCAAAAATTGACCCGAAAAATACTTCCTCAATATTTGGCCACAATACTCGTAAAATATATATAAT
1 GCAAAAATTGATCCGAAAGAT-TTTCCTCAATTTTTAGCCACAATACTCATAAAAAATATATAAT
* * ** *** *
6635 TCAATGCCAAAAAGATTAAAGGGCTTTTCATACTTCTAATATAAATTTTCCTTTTTTTTCAGAAT
65 TCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCTATTTTTTC-GAAT
* * * * * * * *
6700 TAATTTCTAATGAATTTGAAACATGATTCAGATACTAGTAAAAACAAATACTTAAATCTAATGTA
129 TAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTA
* ** *
6765 GCCT-TGATTTGGTTAGATGAATATAGATATTTCAATAAGT-TTGGCGCCAAAAATCATGCAAAA
194 G-CTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTGGCGCAAAAAATCATGCAAAA
* * * * * * **
6828 CTGA-CTCGGTGCCTCGGAACGCGTTTTTCAGCAAAAAAAAAGTGATGGATATTACACGATTTTT
258 CTGAGCT-GGGGCCCCGGAACGCGTTTTT-AGC-CAAAAACAGTGATGGTTAGTACACGATTTCG
6892 GCTAAAATTTT
320 GCTAAAATTTT
* ** * * *
6903 GGAAAAATTGATCCGAAAGTTATTTTCCTTGATTTTT-GGCAAAATAATCATAAAAAATATATAA
1 GCAAAAATTGATCCGAAAG--ATTTTCCTCAATTTTTAGCCACAATACTCATAAAAAATATATAA
* * * * * * * *
6967 TTCAACACCAAAAAGATTGAAGGACTTTTCACGCTTTTGATATCATTTTTCTTTTTTTTTCCAAA
64 TTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCTATTTTTT-CGAA
* * * * *
7032 TTAATTTTTAATTAAATCAAAACAAGATTCAGATTCTCATAAAAACAAATTCTTAAATCCAATGT
128 TTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGT
* * *
7097 ATCTAAGATTTGGTTAGATGAATATAGATATTTCAATGAGT-TTGGCGGC-AAAAATCATGCAAA
193 AGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTGGC-GCAAAAAATCATGCAAA
* * * * * * * *
7160 ACTAAACTAGGGCCTCAGAATGCGTTTTTAGCAAAAAAAACCGTGATGGTTAGTACACGATTTCG
257 ACTGAGCTGGGGCCCCGGAACGCGTTTTTAGC--CAAAAACAGTGATGGTTAGTACACGATTTCG
* *
7225 CCTAAAATTTA
320 GCTAAAATTTT
* ** * * * *
7236 ACAAAACCTGA-CTCGAAAAATTCTTCCTCAATATTTGGCCACAATACT-ACTAAAAAATAAATA
1 GCAAAAATTGATC-CGAAAGATT-TTCCTCAATTTTTAGCCACAATACTCA-TAAAAAATATATA
* * * **
7299 ATTCAACGCCAAAAGGATTGGAA-GGCTTTTCACCCTTCTAATATCCTTTTTGATATTTTTTCGA
63 ATTCAACGCCAAAAAGATT-GAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCTATTTTTTCGA
*
7363 ATTAATTTCTAATTAAATCGAAACAAGATTCTGATGCTCGTAAAAACAAATCCTTAAATCCAATG
127 ATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATG
* * *
7428 TAGCTGATATTTGGTTAGATGAATATAGATTTTTCAAGGAGTCTTGGCGCTAAAAATCATGCAAA
192 TAGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTGGCGCAAAAAATCATGCAAA
** * *
7493 ACTGAGCTGGGGCATCGGAACGCGTTTTCAGCCAAAAACAGTGATGGTTAGTACAGGATTTCGGC
257 ACTGAGCTGGGGCCCCGGAACGCGTTTTTAGCCAAAAACAGTGATGGTTAGTACACGATTTCGGC
7558 TAAAATTTTT
322 TAAAA-TTTT
* * ** * * *
7568 GCAAAAATGGATCCGAAGGATTTATCCTCAATTTTTTTCCAAAATAATCATAGAAAATATATAAT
1 GCAAAAATTGATCCGAAAGATTT-TCCTCAATTTTTAGCCACAATACTCATAAAAAATATATAAT
* * ** *
7633 TCAACGCCAAAAATATTGAAGGG--TTTCACGCTTCTAATATCGATTAACCTATTTTTTTTGAAT
65 TCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCTA-TTTTTTCGAAT
* * * * * ** * * *
7696 TAATTT-TGGATTAAATCGAAACATGTTTCAAATGCTCGTAGAAACAAATAATTAATTCTAAAGT
129 TAATTTCT-AATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGT
* * * * * *
7760 GGCTGAGA-----TT---TG-AT-TAGATATTTCAATGAATCTTGACGGAAAAAATTATGCAAAA
193 AGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTGGCGCAAAAAATCATGCAAAA
* ** * * ** * * *
7815 CTGAAAC-GGGGCCCTAGAACGCTTTTTTCA-CCAAAAGCCTTGATGGTTAATACGCGATTTCAG
258 CTG-AGCTGGGGCCCCGGAACGCGTTTTT-AGCCAAAAACAGTGATGGTTAGTACACGATTTCGG
*
7878 CTAAACTTTT
321 CTAAAATTTT
* * *
7888 GCAAAAATTGACCCAAAAGATTTGT-CTACAAGTTTTAGCCACAATACTCATAAAAAATATATAA
1 GCAAAAATTGATCCGAAAGATTT-TCCT-CAATTTTTAGCCACAATACTCATAAAAAATATATAA
* ** * *
7952 TTGAATACCAAAAGGATTTAAGGGCTTTTCACGCTTCTAATATCGTTTTTCTTTTTCT-TTTTTT
64 TTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTC-----CTATTTTTT
* * * * *
8016 CAAATTAATTTCTAATTAAATCGAAA-AAGATTCAGATGATTGTAAAAA-AAATCTTTACATCCA
124 CGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCA
* * *
8079 ATGT-GACTGAGATTTGGTTAGAT-AA-ATA-ATA--TCAAGGATTATTGGCGAAAAAAAATCAT
189 ATGTAG-CTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTGGCG-CAAAAAATCAT
* * * *** ** * * *
8138 GAAAAACTGAGCCGAGGCCCC--AAAATGTTTTTAGCTTAAAACAATGAT-GTGTAGTTCACGTT
252 GCAAAACTGAGCTGGGGCCCCGGAACGCGTTTTTAGCCAAAAACAGTGATGGT-TAGTACACGAT
* *
8200 TTTGGCTAAATTTTT
316 TTCGGCTAAAATTTT
* *
8215 GCAGAAATTGAAT-C--AA-A-TTT--T--GTTTTT------AAT--TCATTAAGAAAATATATA
1 GCAAAAATTG-ATCCGAAAGATTTTCCTCAATTTTTAGCCACAATACTCA-TAA-AAAATATATA
* * *
8263 ATTCAATGTCC-AAAAGATTGAAGGGCTTTTCACGCTTCTAATATTGTTTTTTCTATTTTTTCCG
63 ATTCAACG-CCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCTATTTTTT-CG
* * * * *
8327 AATTAATTTCTAATTAAATCGAAACAAGATTTAGATGCTTGTAACAA-AAATCCATAAATCCACT
126 AATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAAT
* * * ** * * *
8391 GT-GTCTAAGATTTGGTTAGATTAATATACATATTTCAAACAGTCTTGGTGCCAAAAATCATGAA
191 GTAG-CTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTGGCGCAAAAAATCATGCA
* * * ** *
8455 AAACT-ATG-TTGGGCCCCAGAACGCATTTTTAAACAAAAACTGTGATGGTTAGTACACGATTTC
255 AAACTGA-GCTGGGGCCCCGGAACGCGTTTTTAGCCAAAAACAGTGATGGTTAGTACACGATTTC
* *
8518 GGCAAAAAATTT
319 GGCTAAAATTTT
* * * * * * **
8530 -CAAAAATTGACCCGAAAGATTTTTCTTCAATTTTTAACCATAATACTCTTTAAATCTATATAAT
1 GCAAAAATTGATCCGAAAGA-TTTTCCTCAATTTTTAGCCACAATACTCATAAAAAATATATAAT
* * ** * * *
8594 TTAACTCCAAAAAGATTGAA-AAC---T-AAGCTTCTAATATCGTTTTTAC-AATTTTTCTGAAT
65 TCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCTATTTTTTC-GAAT
* ** * * * *** * *
8653 TAATTTCTGATTAAATCGAAACGTGATTCATATGCTCGTAAAAGCAAATCATCGTATCCAATATG
129 TAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTA
* * * * **
8718 GCTAAGATTTAGTTTGATGAATATAGATATTTCAAGGTGTCTTGGCATAAAAAAATCATGCAAAA
194 GCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTGGC-GCAAAAAATCATGCAAAA
* * ** * * * * * * *
8783 TTAAGCCCGGGCCACGGAACACATTTTT-GTCCCAAAACTGTGATGGTTAGTATACGATTTCGTC
258 CTGAGCTGGGGCCCCGGAACGCGTTTTTAG-CCAAAAACAGTGATGGTTAGTACACGATTTCGGC
*
8847 CAAAATTTT
322 TAAAATTTT
* *
8856 GC-AAAATTGATCCGAAAGATTTTTCCACAATTTTTAGCCACAATACTCATAAAAAAATATATAG
1 GCAAAAATTGATCCGAAAGA-TTTTCCTCAATTTTTAGCCACAATACTCAT-AAAAAATATATAA
* * * *
8920 TGCAACGCCAAAAAGATTGAAGGGCTTTTCATGCTTCTAACATCGTTTTTCTTTCTTTTTTTTCC
64 TTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTC---CTATTTTTT-C
* ** * *
8985 GAATTAATTTCTAATAAAAAAGAAATAAGATTCAGATGCTCGTTAAAACAAATCCTTAAATCCAA
125 GAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAA
* *
9050 TATAGCTGAGATTTGGTTAGATGAATATAGATA-TTCAGGGAGTCTTGGCGCAAAAAATCATGCA
190 TGTAGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTGGCGCAAAAAATCATGCA
* * * * ** * * *
9114 AAACTAAGCT-GGGCCCCGAAACACGTTTTTATCTTAAAACCGTGATGGGTT-GTTCACGATTTT
255 AAACTGAGCTGGGGCCCCGGAACGCGTTTTTAGCCAAAAACAGTGAT-GGTTAGTACACGATTTC
*
9177 GGCTAAATTTTT
319 GGCTAAAATTTT
9189 GCAAAAATTGA
1 GCAAAAATTGA
9200 A
Statistics
Matches: 1818, Mismatches: 375, Indels: 207
0.76 0.16 0.09
Matches are distributed among these distances:
307 2 0.00
308 6 0.00
309 25 0.01
310 54 0.03
311 5 0.00
312 59 0.03
313 13 0.01
314 27 0.01
315 48 0.03
316 4 0.00
317 1 0.00
318 4 0.00
319 5 0.00
320 72 0.04
321 85 0.05
322 30 0.02
323 74 0.04
324 85 0.05
325 47 0.03
326 103 0.06
327 75 0.04
328 21 0.01
329 50 0.03
330 27 0.01
331 115 0.06
332 201 0.11
333 426 0.23
334 51 0.03
335 17 0.01
336 85 0.05
337 1 0.00
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34
Consensus pattern (330 bp):
GCAAAAATTGATCCGAAAGATTTTCCTCAATTTTTAGCCACAATACTCATAAAAAATATATAATT
CAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCTATTTTTTCGAATTA
ATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTAGC
TGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTGGCGCAAAAAATCATGCAAAACTG
AGCTGGGGCCCCGGAACGCGTTTTTAGCCAAAAACAGTGATGGTTAGTACACGATTTCGGCTAAA
ATTTT
Done.