Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016184.1 Corchorus olitorius cultivar O-4 contig16217, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18775

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29--78
22
2.3
21
79
3
55
46
4
2
48
1.32
469--533
24
2.6
25
82
4
78
29
6
4
60
1.41
474--531
25
2.4
24
88
2
80
31
5
3
60
1.35
2876--3006
61
2.1
62
88
2
201
32
12
25
30
1.92
3687--3719
6
5.5
6
89
10
50
3
12
0
84
0.72
5245--5350
48
2.2
48
96
0
194
14
34
22
28
1.93
6579--6611
2
17.0
2
93
6
59
51
0
0
48
1.00
6775--7004
115
2.0
117
91
4
376
36
9
3
49
1.54
7006--7103
37
2.6
37
93
3
162
37
8
1
53
1.38
7111--7155
22
2.0
22
95
0
81
51
28
2
17
1.58
9576--9974
162
2.5
162
90
1
604
30
22
14
33
1.93
12275--12308
2
17.0
2
100
0
68
50
0
0
50
1.00
12917--12942
13
2.0
13
100
0
52
61
7
23
7
1.49
14358--14430
36
2.0
36
86
0
101
20
34
20
24
1.97
15408--15440
17
2.1
16
88
11
50
6
24
0
69
1.10
16478--16518
19
2.1
20
86
4
57
21
0
7
70
1.11
17517--17738
115
1.9
115
92
0
374
37
9
4
49
1.54
17673--17709
13
2.7
14
91
4
58
37
0
5
56
1.22
17740--17834
37
2.6
38
88
8
137
41
8
0
50
1.33

Tables:   1

The End!