Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016188.1 Corchorus olitorius cultivar O-4 contig16221, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47049

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1489--1550
20
3.0
21
81
9
65
80
1
17
0
0.79
1498--1550
22
2.5
22
85
8
67
77
1
20
0
0.87
15730--15754
12
2.1
12
100
0
50
60
16
24
0
1.36
18456--18870
153
2.7
154
86
5
576
36
8
3
52
1.47
19392--19470
29
2.7
30
92
4
133
34
16
8
40
1.80
19639--19702
31
2.1
30
91
5
103
42
14
12
31
1.82
23289--23330
21
2.0
21
100
0
84
14
23
14
47
1.80
36795--36931
72
1.9
72
92
3
231
35
17
18
29
1.94
41681--41785
31
3.5
31
67
10
99
36
17
19
27
1.94
41685--41904
60
3.7
59
90
3
309
35
17
18
28
1.93
41776--41874
29
3.3
29
68
15
85
34
16
20
29
1.94
41805--41908
31
3.4
31
68
15
99
36
19
19
25
1.95
41950--42114
31
5.5
30
67
16
117
27
20
17
34
1.95
41950--42110
60
2.7
60
94
1
270
27
19
17
35
1.94
42369--42415
23
2.0
23
100
0
94
34
4
21
40
1.73
42645--42678
17
2.0
17
100
0
68
11
35
11
41
1.78
45269--45336
30
2.3
30
100
0
136
20
29
10
39
1.86
46398--46449
16
3.5
16
75
20
67
48
30
0
21
1.51
46393--46457
28
2.3
28
97
0
121
47
32
0
20
1.50
46746--46784
14
2.9
13
80
3
51
53
2
2
41
1.28
46770--47026
125
2.0
127
88
7
378
50
1
10
37
1.48

Tables:   1

The End!