Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016189.1 Corchorus olitorius cultivar O-4 contig16222, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57576

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3883--3910
13
2.2
13
100
0
56
39
0
7
53
1.28
3888--3958
28
2.5
28
79
4
88
40
2
12
43
1.57
10710--10775
25
2.7
25
97
2
125
31
18
0
50
1.47
24922--24971
20
2.5
20
96
0
91
8
0
46
46
1.32
28110--28187
39
2.0
39
100
0
156
23
10
33
33
1.88
29441--29487
6
7.8
6
97
0
85
31
2
65
0
1.04
38657--38786
64
2.0
64
100
0
260
41
13
16
28
1.86
52991--53765
317
2.4
316
80
7
841
36
16
14
33
1.88
54645--56973
322
7.3
321
86
3
3031
35
17
15
31
1.91
54645--57576
644
4.6
637
85
5
3622
35
17
15
31
1.91
56699--57263
291
1.9
290
88
2
839
34
17
15
31
1.92

Tables:   1

The End!