Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01016190.1 Corchorus olitorius cultivar O-4 contig16223, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6523
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Found at i:1231 original size:323 final size:324
Alignment explanation
Indices: 5--1245 Score: 1519
Period size: 323 Copynumber: 3.8 Consensus size: 324
1 TCTC
* * **
5 AATTTTTTACCATAATAC-TCAGAAAAAATATATAATTCAATGCCAAAAAGATTGACAAGCTTTT
1 AATTTTTTGCCACAATACAT-AGAAAAAATATATAATTCAACCCCAAAAAGATTGACAAGCTTTT
* * *
69 CACACTTCTAGCTAATATCGTCTTTCCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAAGAA
65 CACAC-TATA-CTAATATCGTTTTTCCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAA
* * * *
134 GATTCAGATGCTTGTAAAACCAAATCCTTATATCCAATGTGGCTGACATTGATTTGATGAAT-AA
128 GATTCAGATGCTCGAAAAAACAAATCCTTATATCCAATATGGCTG--A--GATTTGAT---TCAA
* *
198 TTGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCACGTAAAATTGAGTCGGGGCTCCGG
186 -TGAATATAGATATTTCAAGGAGTCTTTGCGCAAAAAATCACGCAAAATTGAGTCGGGGCTCCGG
*
263 AACGCGTGTTTAGCCAAAAAACCGTGATGGTTGGTACACGATTTCGGCTAAAAACTGACCCGAAA
250 AACGCGTGTTTAGCC-AAAAACCGTGATGGTTGATACACGATTTCGGCTAAAAACTGACCCGAAA
328 AGTATTTTCTA
314 AGTATTTTCTA
**
339 AATTTTTTGCCACAATACATAGAAAAAATATAT-ATTCAACCCCAAAAAGATTGACGGGCTTTTC
1 AATTTTTTGCCACAATACATAGAAAAAATATATAATTCAACCCCAAAAAGATTGACAAGCTTTTC
* *
403 ACGA-T-T-CTAATATTGGTTTTCCATTTTTTGT-CGAATTAATTTCTAATTAAATCGAAACAAG
66 AC-ACTATACTAATATCGTTTTTCCATTTTTT-TCCGAATTAATTTCTAATTAAATCGAAACAAG
* * * * *
464 ATTGAGATGCTCGAAAAAACAAATACTTATATCCAATATTGCTGAGCTTTGATTCGATGAATATA
129 ATTCAGATGCTCGAAAAAACAAATCCTTATATCCAATATGGCTGAGATTTGATTCAATGAATATA
* * * * * * * *
529 GATATTTCACGGAGT-ATTACGCCAAAAATCATGCAAAATTGAGACGGGGCCCCGGAACGCGTTT
194 GATATTTCAAGGAGTCTTTGCGCAAAAAATCACGCAAAATTGAGTCGGGGCTCCGGAACGCGTGT
* * * *
593 TTCG-CAAAAACCGTTATGGTT-AGTACACGATTTCGGCCAAAAACTGACCCGAAAAGTATTTTG
259 TTAGCCAAAAACCGTGATGGTTGA-TACACGATTTCGGCTAAAAACTGACCCGAAAAGTATTTTC
*
656 TC
323 TA
* * * ***
658 AGTTTTTTGCCACAATAC-TCAGAAATAACATATAATTCAAAGTCAAAAAGATTGACAAGCTTTT
1 AATTTTTTGCCACAATACAT-AGAAAAAATATATAATTCAACCCCAAAAAGATTGACAAGCTTTT
*
722 CACACTTATAGCTAATATCGTTTTTCCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAAGAA
65 CACAC-TATA-CTAATATCGTTTTTCCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAA
* * * * * **
787 GATTCAGATGCTTGTAAAACCAAATCCTTATATCCAATGTGGCTGACATTTGATTTGATGAATAT
128 GATTCAGATGCTCGAAAAAACAAATCCTTATATCCAATATGGCTGAGATTTGATTCAATGAATAT
* **
852 AGATATTTCAAGGAGTCTTTGCGCTAAAAATCACGTGAAATTGAGTCGGGGCTCCGGAACGCGTG
193 AGATATTTCAAGGAGTCTTTGCGCAAAAAATCACGCAAAATTGAGTCGGGGCTCCGGAACGCGTG
* * *
917 TTTAGCCAAAAACCGTGATGGTTGATACACGCTTTTCAGCTAAAAACTGACTCGAAAAGTATTTT
258 TTTAGCCAAAAACCGTGATGGTTGATACACG-ATTTCGGCTAAAAACTGACCCGAAAAGTATTTT
982 CTA
322 CTA
* **
985 AATTTTTTGCTACAATACATAGAAAAAATATATAATTCAACCCCAAAAAGATTGACGGGCTTTTC
1 AATTTTTTGCCACAATACATAGAAAAAATATATAATTCAACCCCAAAAAGATTGACAAGCTTTTC
* *
1050 ACGA-T-T-CTAATATTGTTTTTCAATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGA
66 AC-ACTATACTAATATCGTTTTTCCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGA
* * *
1112 TTGAGATGCTCGAAAAAACAAATCCGTATATCCAATATGGCTGAGATTTGGTTCAATGAATATAG
130 TTCAGATGCTCGAAAAAACAAATCCTTATATCCAATATGGCTGAGATTTGATTCAATGAATATAG
* * * ** **
1177 ATATTACAAGGAGTTTTTGCGTC-AATAATCATACAAAATTGAGAT-GCAGCTCCGGAACGCGT-
195 ATATTTCAAGGAGTCTTTGCG-CAAAAAATCACGCAAAATTGAG-TCGGGGCTCCGGAACGCGTG
1239 TTT-GCCA
258 TTTAGCCA
1246 CAATACTCAG
Statistics
Matches: 781, Mismatches: 105, Indels: 55
0.83 0.11 0.06
Matches are distributed among these distances:
318 1 0.00
319 83 0.11
320 29 0.04
321 48 0.06
322 27 0.03
323 159 0.20
324 121 0.15
325 51 0.07
326 23 0.03
327 88 0.11
328 2 0.00
329 86 0.11
330 1 0.00
331 1 0.00
332 1 0.00
333 29 0.04
334 30 0.04
335 1 0.00
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32
Consensus pattern (324 bp):
AATTTTTTGCCACAATACATAGAAAAAATATATAATTCAACCCCAAAAAGATTGACAAGCTTTTC
ACACTATACTAATATCGTTTTTCCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGAT
TCAGATGCTCGAAAAAACAAATCCTTATATCCAATATGGCTGAGATTTGATTCAATGAATATAGA
TATTTCAAGGAGTCTTTGCGCAAAAAATCACGCAAAATTGAGTCGGGGCTCCGGAACGCGTGTTT
AGCCAAAAACCGTGATGGTTGATACACGATTTCGGCTAAAAACTGACCCGAAAAGTATTTTCTA
Found at i:1364 original size:16 final size:16
Alignment explanation
Indices: 1343--1377 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
1333 AGAATTCAGA
1343 AAGCAGAAAAGCTCTG
1 AAGCAGAAAAGCTCTG
1359 AAGCAGAAAAGCTCTG
1 AAGCAGAAAAGCTCTG
1375 AAG
1 AAG
1378 TATTTTCAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.46, C:0.17, G:0.26, T:0.11
Consensus pattern (16 bp):
AAGCAGAAAAGCTCTG
Found at i:1530 original size:41 final size:41
Alignment explanation
Indices: 1473--1755 Score: 363
Period size: 41 Copynumber: 6.9 Consensus size: 41
1463 TTTTCGTTTG
1473 TTCAAGATCAAGTCATCGAGACCCTTGAATTAAATTATCAA
1 TTCAAGATCAAGTCATCGAGACCCTTGAATTAAATTATCAA
** *
1514 TTCAAGATTGAGTCATCGAGACCCTTGAATGAAATTATCAA
1 TTCAAGATCAAGTCATCGAGACCCTTGAATTAAATTATCAA
**
1555 TTCAAGATTGAGTCATCGAGACCCTTGAATTAAATTATCAA
1 TTCAAGATCAAGTCATCGAGACCCTTGAATTAAATTATCAA
** *
1596 TTCAAGATTGAGTCTTCGAGACCCTTGAATTAAATTATCAA
1 TTCAAGATCAAGTCATCGAGACCCTTGAATTAAATTATCAA
* * *
1637 TTCAAGAACAAGTCATCGAGACCCTTGAATCGAATTATTAACAA
1 TTCAAGATCAAGTCATCGAGACCCTTGAAT-TAA--ATTATCAA
* * * *
1681 TTCAAGGTCAAGTCGTCAACACCCTTGAATTAAATTATCAA
1 TTCAAGATCAAGTCATCGAGACCCTTGAATTAAATTATCAA
* *
1722 TTCAAGAACAAGTCATTC--GACCCTTGAATCAAAT
1 TTCAAGATCAAGTCA-TCGAGACCCTTGAATTAAAT
1756 CAAATCAAAC
Statistics
Matches: 215, Mismatches: 23, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
40 14 0.07
41 163 0.76
42 4 0.02
43 2 0.01
44 32 0.15
ACGTcount: A:0.37, C:0.19, G:0.14, T:0.29
Consensus pattern (41 bp):
TTCAAGATCAAGTCATCGAGACCCTTGAATTAAATTATCAA
Found at i:3604 original size:70 final size:69
Alignment explanation
Indices: 3493--3640 Score: 251
Period size: 70 Copynumber: 2.1 Consensus size: 69
3483 ACACAAAACC
* *
3493 AAAAAGAAAAAAACAGCTCGCTAAGTTGAAAATCCTGTAAAGGACGACTTAGGCAAAAGTTAGAG
1 AAAAAAAAAAAAACAGCTCGCTAAGTTGAAAATCCTATAAAGGACGACTTAGGCAAAAGTTAGAG
3558 CAAA
66 CAAA
*
3562 AAAAAAAAAAAAATCAGCTCGCTAAGTTGAAAATCCTATAAAGGACGGCTTAGGCAAAAGTTAGA
1 AAAAAAAAAAAAA-CAGCTCGCTAAGTTGAAAATCCTATAAAGGACGACTTAGGCAAAAGTTAGA
*
3627 GCGAA
65 GCAAA
3632 AAAAAAAAA
1 AAAAAAAAA
3641 GTTCGCTAAG
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
69 12 0.16
70 62 0.84
ACGTcount: A:0.52, C:0.14, G:0.19, T:0.16
Consensus pattern (69 bp):
AAAAAAAAAAAAACAGCTCGCTAAGTTGAAAATCCTATAAAGGACGACTTAGGCAAAAGTTAGAG
CAAA
Found at i:3669 original size:63 final size:64
Alignment explanation
Indices: 3492--3705 Score: 241
Period size: 70 Copynumber: 3.2 Consensus size: 64
3482 CACACAAAAC
*
3492 CAAAAAGAAAAAAACAGCTCGCTAAGTTGAAAATCCTGTAAAGGACGACTTAGGCAAAAGTTAGA
1 CAAAAA-AAAAAAA-AGCTCGCTAAGTTGAAAATCCTGTAAAGGACGGCTTAGGCAAAAGTTAGA
3557 G
64 G
*
3558 CAAAAAAAAAAAAAAAATCAGCTCGCTAAGTTGAAAATCCTATAAAGGACGGCTTAGGCAAAAGT
1 C----AAAAAAAAAAAA--AGCTCGCTAAGTTGAAAATCCTGTAAAGGACGGCTTAGGCAAAAGT
3623 TAGAG
60 TAGAG
* * * ** * * * *
3628 C-GAAAAAAAAAAAGTTCGCTAAGCTGAAAATCCTGCGAAGGACAGCTTAAGAAAAATTTAGAG
1 CAAAAAAAAAAAAAGCTCGCTAAGTTGAAAATCCTGTAAAGGACGGCTTAGGCAAAAGTTAGAG
3691 CACAAAAAAAAAAAA
1 CA-AAAAAAAAAAAA
3706 ACAAATGAAC
Statistics
Matches: 128, Mismatches: 13, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
63 43 0.34
65 21 0.16
66 1 0.01
69 7 0.05
70 56 0.44
ACGTcount: A:0.51, C:0.14, G:0.19, T:0.16
Consensus pattern (64 bp):
CAAAAAAAAAAAAAGCTCGCTAAGTTGAAAATCCTGTAAAGGACGGCTTAGGCAAAAGTTAGAG
Found at i:4575 original size:41 final size:41
Alignment explanation
Indices: 4518--4800 Score: 354
Period size: 41 Copynumber: 6.9 Consensus size: 41
4508 TTTTCGTTTG
4518 TTCAAGATCAAGTCATCGAGACCCTTGAATTAAATTATCAA
1 TTCAAGATCAAGTCATCGAGACCCTTGAATTAAATTATCAA
** *
4559 TTCAAGATTGAGTCATCGAGACCCTTGAATTAAATTGTCAA
1 TTCAAGATCAAGTCATCGAGACCCTTGAATTAAATTATCAA
**
4600 TTCAAGATTGAGTCATCGAGACCCTTGAATTAAATTATCAA
1 TTCAAGATCAAGTCATCGAGACCCTTGAATTAAATTATCAA
** *
4641 TTCAAGATTGAGTCTTCGAGACCCTTGAATTAAATTATCAA
1 TTCAAGATCAAGTCATCGAGACCCTTGAATTAAATTATCAA
* * **
4682 TTCAAGAACAAGTCATCGAGACCCTTGAATCGAATTATTAAAAA
1 TTCAAGATCAAGTCATCGAGACCCTTGAAT-TAA--ATTATCAA
* * * *
4726 TTCAAGGTCAAGTCGTCAACACCCTTGAATTAAATTATCAA
1 TTCAAGATCAAGTCATCGAGACCCTTGAATTAAATTATCAA
* *
4767 TTCAAGAACAAGTCATTC-A-ACCCTTGAATCAAAT
1 TTCAAGATCAAGTCA-TCGAGACCCTTGAATTAAAT
4801 CAAATCAAAC
Statistics
Matches: 214, Mismatches: 24, Indels: 9
0.87 0.10 0.04
Matches are distributed among these distances:
40 14 0.07
41 163 0.76
42 4 0.02
43 2 0.01
44 31 0.14
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.30
Consensus pattern (41 bp):
TTCAAGATCAAGTCATCGAGACCCTTGAATTAAATTATCAA
Found at i:5819 original size:323 final size:320
Alignment explanation
Indices: 5018--6520 Score: 1841
Period size: 323 Copynumber: 4.7 Consensus size: 320
5008 GTGTGTTACA
* * * **
5018 CGAATTAATTTGTAATTAAATTGAAACAAAATTGAGATGCTCGAAAAAACAAATTATTATATCCA
1 CGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCA
* ** * * * * * *
5083 ATATTAG-TGAGCTTCGGTTCGATGAATATAGATATTTCACGGAGTCTTTACGCCAAAAATCATG
66 ATA-TGGCTGAAATTTGGTTAGATGAATATAGATATTTCAAGGAGTTTTTGCGCCAATAATCATG
* * *
5147 CAAAATTGAGACGGGGCCCCTGAACGCGTTTTTTAG-CAAAATCCGTGATGGTTAGTACACGATT
130 CAAAATTGAGACGGGGCTCCGGAACGCG-TTTTTAGCCAAAAACCGTGATGGTTAGTACACGATT
* * *
5211 TCGG-TCAAAAACTGACCCTAAAAGTATTTTGTCAATATTTTGCCACAATACTCAGAAATAATAT
194 TCGGCT-AAAAACTGACCC-AAAAGTATTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATAT
5275 ATAATTCAACGCCAAAAAGATAGACGGGT-TTTTCACGCTTCTAATATCGTTTTTCCATTTTTTT
257 ATAATTCAACGCCAAAAAGATAGAC-GGTCTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTT
* *
5339 CGAATTAGTTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATTCTTATATCCA
1 CGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCA
* **
5404 ATATGGCT-AAGATTTGGTTCA-ATGAATATAGATATTTTAAGGAGTTTTTGCAACAATAATCAT
66 ATATGGCTGAA-ATTTGGTT-AGATGAATATAGATATTTCAAGGAGTTTTTGCGCCAATAATCAT
* * * * *
5467 GAAAAATTGAGCCGCGGCTCTGGAACGCGTTTTTAGCCAAAAACCATGATGGTTAGGT-CACGAT
129 GCAAAATTGAGACGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTA-GTACACGAT
* *
5531 TTCGGCTAAAAACTGACCCAAAAGTATTTTCTCAATTTTTTGCCATAAGT-CTTAGAAAAAATAT
193 TTCGGCTAAAAACTGACCCAAAAGTATTTTCTCAATTTTTTGCCACAA-TACTCAGAAAAAATAT
* * * * * *
5595 ATAATTTAACGGCAAAAAGATTGACGGTCTTTTCACTCGTATAATATCGTTTTTTTCCATTTTTT
257 ATAATTCAACGCCAAAAAGATAGACGGTCTTTTCACGCTTCTAATATCG--TTTTTCCATTTTTT
5660 T
320 T
5661 CGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAAACAAATCCTTATAT-C
1 CGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCG-AAAAAACAAATCCTTATATCC
* * *
5725 AATTATGGTTGAAATTTGGTTAGATGAATATAGATATTT-AAGGCAGTTTTTGCGTCAATTATCA
65 AA-TATGGCTGAAATTTGGTTAGATGAATATAGATATTTCAAGG-AGTTTTTGCGCCAATAATCA
* * *
5789 TGCAAAATTGAGACGGGGCTCCGGAACGCGTTTCTAGCCAAAAACCGTGAAGGGGTTAGTACATG
128 TGCAAAATTGAGACGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTG-A-TGGTTAGTACACG
* * * * *
5854 ATTTCGACTAAAAACTGACCTGAAAAAT-TTCTTCTCAAATTTTTGCCACAATATTCAGAAAAAA
191 ATTTCGGCTAAAAACTGACC-CAAAAGTATT-TTCTCAATTTTTTGCCACAATACTCAG-AAAAA
* * * *
5918 ATATATAATTCAATGCCAAAAAGATTGATAGG-CTTTTCACACTTCTAATATCGTTTTTCCATTT
253 ATATATAATTCAACGCCAAAAAGATAGA-CGGTCTTTTCACGCTTCTAATATCGTTTTTCCATTT
5982 TTTT
317 TTTT
* * * * * *
5986 CCAAATTAATTTCTAATTAAATTGATACAAGATTTAGATGCTCGTAAAAACAAATCCTTATGTCC
1 -CGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCC
* * * *
6051 AATGTGGCTGACATTTAGTTCA-ATGAATATAGATATTTCCAA-GAGTTTTTGTGCCAATAATCA
65 AATATGGCTGAAATTTGGTT-AGATGAATATAGATATTT-CAAGGAGTTTTTGCGCCAATAATCA
* * * * *
6114 TGCAAAATTGAGCCGCGGCTCCGAAACACGTTTTAAGCCAAAAACCGTGATGGTTAGTACACGAT
128 TGCAAAATTGAGACGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGAT
* * *
6179 TTCGGCTAAAAACTGAGCCGAAAAGTATTTTGTCAATTTTTTACCACAATACTCAGAAATAAA-A
193 TTCGGCTAAAAACTGA-CCCAAAAGTATTTTCTCAATTTTTTGCCACAATACTCAGAAA-AAATA
* *
6243 TATAATTAAACGCCAAAAAGATAGACGGGCTTTTCACGCTTCTAATATCGTTTTTTCCATTTTTT
256 TATAATTCAACGCCAAAAAGATAGACGGTCTTTTCACGCTTCTAATATCG-TTTTTCCA-TTTTT
6308 TT
319 TT
* * * *
6310 CGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAAGAAATCCTTATGTCCA
1 CGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCA
* * * * * * *
6375 ATGTGGCTGACATTTGGTTCGATGAATGTATG-TATTTCAAGGAGTCTTTGCGCGAAAAATCATG
66 ATATGGCTGAAATTTGGTTAGATGAATATA-GATATTTCAAGGAGTTTTTGCGCCAATAATCATG
* * * * *
6439 TAAAATTGAGTCGGGGCTCCAGAATGCGTTTTTAGCCATAAACCGTGATGGTTAGTACACGATTT
130 CAAAATTGAGACGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTT
6504 CGGCTAAAAACTGACCC
195 CGGCTAAAAACTGACCC
6521 GAA
Statistics
Matches: 1027, Mismatches: 118, Indels: 73
0.84 0.10 0.06
Matches are distributed among these distances:
319 3 0.00
320 87 0.08
321 170 0.17
322 119 0.12
323 356 0.35
324 18 0.02
325 152 0.15
326 70 0.07
327 50 0.05
328 2 0.00
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (320 bp):
CGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCA
ATATGGCTGAAATTTGGTTAGATGAATATAGATATTTCAAGGAGTTTTTGCGCCAATAATCATGC
AAAATTGAGACGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTC
GGCTAAAAACTGACCCAAAAGTATTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAA
TTCAACGCCAAAAAGATAGACGGTCTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTT
Found at i:6299 original size:648 final size:640
Alignment explanation
Indices: 5018--6519 Score: 1975
Period size: 648 Copynumber: 2.3 Consensus size: 640
5008 GTGTGTTACA
* * * **
5018 CGAATTAATTTGTAATTAAATTGAAACAAAATTGAGATGCTCGAAAAAACAAATTATTATATCCA
1 CGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCA
* ** * * *
5083 ATATTAGTGAGCTTCGGTTCGATGAATATAGATATTTCACGGAGTCTTTACGCCAAAAATCATGC
66 ATA-TGGTGAAATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGCG-CAAAAATCATGC
* * *
5148 AAAATTGAGACGGGGCCCCTGAACGCGTTTTTTAG-CAAAATCCGTGATGGTTAGTACACGATTT
129 AAAATTGAGACGGGGCTCCAGAACGCG-TTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTT
* * * *
5212 CGGTCAAAAACTGACCCTAAAAGTATTTTGTCAATATTTTGCCACAATACTCAGAAATAATATAT
193 CGCT-AAAAACTGA-CCTAAAAATATTTTCTCAATATTTTGCCACAATACTCAGAAAAAATATAT
* * * *
5277 AATTCAACGCCAAAAAGATAGACGGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCGA
256 AATTCAACGCCAAAAAGATAGACAGGCTTTTCACACTTCTAATATCGTTTTTCCATTTTTTTCAA
* *
5342 ATTAGTTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATTCTTATATCCAATA
321 ATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAATA
* * *
5407 TGGCTAAGATTTGGTTCAATGAATATAGATATTTTAAGGAGTTTTTGCAACAATAATCATGAAAA
386 TGGCTAACATTTAGTTCAATGAATATAGATATTTCAAGGAGTTTTTGCAACAATAATCATGAAAA
* * * *
5472 ATTGAGCCGCGGCTCTGGAACGCGTTTTTAGCCAAAAACCATGATGGTTAGGTCACGATTTCGGC
451 ATTGAGCCGCGGCTCCGAAACACGTTTTAAGCCAAAAACCATGATGGTTAGGTCACGATTTCGGC
* * * *
5537 TAAAAACTGACCCAAAAGTATTTTCTCAATTTTTTGCCATAAGTCTTAGAAAAAATATATAATTT
516 TAAAAACTGACCCAAAAGTATTTTCTCAATTTTTTACCACAAGTCTCAGAAAAAATATATAATTA
* * * *
5602 AACGGCAAAAAGATTGACGGTCTTTTCACTCGTATAATATCGTTTTTTTCCA-TTTTTTT
581 AACGCCAAAAAGATAGACGGGCTTTTCACGCGTATAATATCGTTTTTTTCCATTTTTTTT
5661 CGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAAACAAATCCTTATAT-C
1 CGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCG-AAAAAACAAATCCTTATATCC
* * **
5725 AATTATGGTTGAAATTTGGTTAGATGAATATAGATATTT-AAGGCAGTTTTTGCGTCAATTATCA
65 AA-TATGG-TGAAATTTGGTTCGATGAATATAGATATTTCAAGG-AGTCTTTGCG-CAAAAATCA
* * * *
5789 TGCAAAATTGAGACGGGGCTCCGGAACGCGTTTCTAGCCAAAAACCGTGAAGGGGTTAGTACATG
126 TGCAAAATTGAGACGGGGCTCCAGAACGCGTTTTTAGCCAAAAACCGTG-A-TGGTTAGTACACG
*
5854 ATTTCGACTAAAAACTGACCTGAAAAAT-TTCTTCTCAA-ATTTTTGCCACAATATTCAGAAAAA
189 ATTTCG-CTAAAAACTGACCT-AAAAATATT-TTCTCAATA-TTTTGCCACAATACTCAG-AAAA
* * *
5917 AATATATAATTCAATGCCAAAAAGATTGATAGGCTTTTCACACTTCTAATATCGTTTTTCCATTT
249 AATATATAATTCAACGCCAAAAAGATAGACAGGCTTTTCACACTTCTAATATCGTTTTTCCATTT
* * * *
5982 TTTTCCAAATTAATTTCTAATTAAATTGATACAAGATTTAGATGCTCGTAAAAACAAATCCTTAT
314 TTTT-CAAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTAT
* * * ***
6047 GTCCAATGTGGCTGACATTTAGTTCAATGAATATAGATATTTCCAA-GAGTTTTTGTGCCAATAA
378 ATCCAATATGGCTAACATTTAGTTCAATGAATATAGATATTT-CAAGGAGTTTTTGCAACAATAA
* *
6111 TCATGCAAAATTGAGCCGCGGCTCCGAAACACGTTTTAAGCCAAAAACCGTGATGGTTA-GTACA
442 TCATGAAAAATTGAGCCGCGGCTCCGAAACACGTTTTAAGCCAAAAACCATGATGGTTAGGT-CA
* *
6175 CGATTTCGGCTAAAAACTGAGCCGAAAAGTATTTTGTCAATTTTTTACCACAA-TACTCAGAAAT
506 CGATTTCGGCTAAAAACTGA-CCCAAAAGTATTTTCTCAATTTTTTACCACAAGT-CTCAGAAA-
* *
6239 AAA-ATATAATTAAACGCCAAAAAGATAGACGGGCTTTTCACGCTTCTAATATCG-TTTTTTCCA
568 AAATATATAATTAAACGCCAAAAAGATAGACGGGCTTTTCACGCGTATAATATCGTTTTTTTCCA
6302 TTTTTTTT
633 TTTTTTTT
* * * *
6310 CGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAAGAAATCCTTATGTCCA
1 CGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCA
* * *
6375 ATGTGGCTGACATTTGGTTCGATGAATGTATG-TATTTCAAGGAGTCTTTGCGCGAAAAATCATG
66 ATATGG-TGAAATTTGGTTCGATGAATATA-GATATTTCAAGGAGTCTTTGCGC-AAAAATCATG
* * * *
6439 TAAAATTGAGTCGGGGCTCCAGAATGCGTTTTTAGCCATAAACCGTGATGGTTAGTACACGATTT
128 CAAAATTGAGACGGGGCTCCAGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTT
6504 CGGCTAAAAACTGACC
193 C-GCTAAAAACTGACC
6520 CGAA
Statistics
Matches: 748, Mismatches: 87, Indels: 45
0.85 0.10 0.05
Matches are distributed among these distances:
643 54 0.07
644 98 0.13
645 7 0.01
646 83 0.11
647 72 0.10
648 293 0.39
649 138 0.18
650 3 0.00
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (640 bp):
CGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCA
ATATGGTGAAATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGCGCAAAAATCATGCAA
AATTGAGACGGGGCTCCAGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGC
TAAAAACTGACCTAAAAATATTTTCTCAATATTTTGCCACAATACTCAGAAAAAATATATAATTC
AACGCCAAAAAGATAGACAGGCTTTTCACACTTCTAATATCGTTTTTCCATTTTTTTCAAATTAA
TTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAATATGGCT
AACATTTAGTTCAATGAATATAGATATTTCAAGGAGTTTTTGCAACAATAATCATGAAAAATTGA
GCCGCGGCTCCGAAACACGTTTTAAGCCAAAAACCATGATGGTTAGGTCACGATTTCGGCTAAAA
ACTGACCCAAAAGTATTTTCTCAATTTTTTACCACAAGTCTCAGAAAAAATATATAATTAAACGC
CAAAAAGATAGACGGGCTTTTCACGCGTATAATATCGTTTTTTTCCATTTTTTTT
Done.