Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016191.1 Corchorus olitorius cultivar O-4 contig16224, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1876
ACGTcount: A:0.36, C:0.16, G:0.13, T:0.35


Found at i:1825 original size:72 final size:72

Alignment explanation


    Indices: 1708--1852  Score: 281
    Period size: 72  Copynumber: 2.0  Consensus size: 72

       1698 AAGGGAAGAT

                                                                             
       1708 AGTTAATTTCATTCATCCATCGATTCTTATTCTTATTAGTCAAAGACTTAACCATGACATGCTCA
          1 AGTTAATTTCATTCATCCATCGATTCTTATTCTTATTAGTCAAAGACTTAACCATGACATGCTCA

                   
       1773 GCACAGC
         66 GCACAGC

                            *                                                
       1780 AGTTAATTTCATTCATTCATCGATTCTTATTCTTATTAGTCAAAGACTTAACCATGACATGCTCA
          1 AGTTAATTTCATTCATCCATCGATTCTTATTCTTATTAGTCAAAGACTTAACCATGACATGCTCA

                   
       1845 GCACAGC
         66 GCACAGC

             
       1852 A
          1 A

       1853 AAAACAAATT


Statistics
Matches: 72,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  72   72  1.00

ACGTcount: A:0.31, C:0.23, G:0.11, T:0.35


Consensus pattern (72 bp):   
AGTTAATTTCATTCATCCATCGATTCTTATTCTTATTAGTCAAAGACTTAACCATGACATGCTCA
GCACAGC
Done.