Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016197.1 Corchorus olitorius cultivar O-4 contig16230, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20406

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2008--2071
31
2.1
31
100
0
128
40
6
29
23
1.79
2263--2464
55
3.7
55
85
0
278
45
11
15
27
1.80
2260--2460
110
1.8
110
93
0
348
45
11
15
26
1.81
3084--3594
55
9.5
55
90
3
681
42
13
18
26
1.87
3084--3594
109
4.8
110
87
5
683
42
13
18
26
1.87
3453--3594
52
2.9
48
88
5
187
44
10
16
28
1.81
10388--10461
37
2.0
37
100
0
148
32
10
18
37
1.86
13264--13321
29
2.0
29
96
0
107
34
32
6
25
1.83
18003--18037
6
5.5
6
90
10
52
71
28
0
0
0.86
18002--18037
7
5.4
7
93
6
58
72
27
0
0
0.85
17970--18037
13
5.2
13
89
0
64
85
14
0
0
0.60
17970--18006
1
37.0
1
100
0
74
100
0
0
0
0.00
18469--18494
10
2.6
10
100
0
52
38
23
7
30
1.83
19339--19382
12
3.6
12
81
3
52
27
20
11
40
1.86
19337--19383
13
3.8
13
80
11
62
25
21
10
42
1.85

Tables:   1

The End!