Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016198.1 Corchorus olitorius cultivar O-4 contig16231, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15739

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1014--1084
29
2.4
30
81
11
92
40
21
16
21
1.91
2101--2183
42
2.0
43
88
7
125
22
19
22
34
1.96
2171--2213
20
2.1
21
86
4
61
39
20
18
20
1.93
2544--2580
5
7.4
5
100
0
74
0
21
37
40
1.54
2689--2719
12
2.6
12
94
0
53
48
32
19
0
1.49
3162--3269
57
1.9
57
100
0
216
29
7
22
40
1.81
5562--5667
31
3.5
30
73
12
92
21
16
22
38
1.93
6257--6334
20
3.6
23
70
23
62
43
8
7
39
1.65
6300--6339
20
2.0
20
90
0
62
47
12
10
30
1.74
6237--6393
22
7.2
22
71
9
90
41
14
5
38
1.70
6504--6653
22
6.6
22
73
8
122
34
20
7
38
1.81
6537--6629
48
1.9
48
88
0
141
30
20
8
40
1.82
6504--6653
70
2.2
66
82
7
176
34
20
7
38
1.81
6504--6773
22
12.3
22
67
18
102
32
17
9
39
1.83
6552--6758
105
1.9
107
82
7
260
32
16
10
40
1.83
13994--14075
30
2.7
30
81
5
112
31
25
14
28
1.95
14255--14375
31
4.0
30
77
8
120
34
13
23
28
1.92
14302--14375
29
2.5
31
86
6
107
33
12
25
28
1.92

Tables:   1

The End!