Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016199.1 Corchorus olitorius cultivar O-4 contig16232, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14623
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31


Found at i:6700 original size:18 final size:18

Alignment explanation


    Indices: 6677--6714  Score: 58
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       6667 CTCCTCTATC

                     *        
       6677 ATGAAAACACTTCTTTTT
          1 ATGAAAACAATTCTTTTT

                        *     
       6695 ATGAAAACAATTTTTTTT
          1 ATGAAAACAATTCTTTTT

              
       6713 AT
          1 AT

       6715 TACCCTTTAT


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.37, C:0.11, G:0.05, T:0.47


Consensus pattern (18 bp):   
ATGAAAACAATTCTTTTT
Done.