Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016203.1 Corchorus olitorius cultivar O-4 contig16236, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2417
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35


Found at i:1223 original size:37 final size:37

Alignment explanation


    Indices: 1173--1247  Score: 107
    Period size: 37  Copynumber: 2.0  Consensus size: 37

       1163 CGGGATGTAT

                                                  
       1173 TTACAACAATTACAAGAATCAAG-GAATTACAACCAAA
          1 TTACAACAATTACAAGAATCAAGAGAATTACAA-CAAA

                  *       *           *          
       1210 TTACAATAATTACATGAATCAAGAGATTTACAACAAA
          1 TTACAACAATTACAAGAATCAAGAGAATTACAACAAA

             
       1247 T
          1 T

       1248 CAAGGAAGCT


Statistics
Matches: 34,  Mismatches: 3, Indels: 2
        0.87            0.08        0.05

Matches are distributed among these distances:
  37   26  0.76
  38    8  0.24

ACGTcount: A:0.52, C:0.16, G:0.08, T:0.24


Consensus pattern (37 bp):   
TTACAACAATTACAAGAATCAAGAGAATTACAACAAA
Done.