Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016204.1 Corchorus olitorius cultivar O-4 contig16237, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3266
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.36


Found at i:1111 original size:25 final size:24

Alignment explanation


    Indices: 1075--1121  Score: 85
    Period size: 25  Copynumber: 1.9  Consensus size: 24

       1065 AATACTTACA

                                    
       1075 TTAATTAAATTCTTAGGTATTTTC
          1 TTAATTAAATTCTTAGGTATTTTC

                                   
       1099 TTAATTCAAATTCTTAGGTATTT
          1 TTAATT-AAATTCTTAGGTATTT

       1122 GTGCAAACGT


Statistics
Matches: 22,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  24    6  0.27
  25   16  0.73

ACGTcount: A:0.30, C:0.09, G:0.09, T:0.53


Consensus pattern (24 bp):   
TTAATTAAATTCTTAGGTATTTTC
Done.