Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016205.1 Corchorus olitorius cultivar O-4 contig16238, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5705
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35


Found at i:5439 original size:30 final size:30

Alignment explanation


    Indices: 5372--5441  Score: 74
    Period size: 30  Copynumber: 2.3  Consensus size: 30

       5362 GGACTAATGT

                                       ** 
       5372 CCAAATTGGGTCTAAACCTTTTCAAACTTG
          1 CCAAATTGGGTCTAAACCTTTTCAAACAGG

                                            
       5402 CTC-AATTGGAGTCTAAACC-TTT-AAACAGG
          1 C-CAAATTGG-GTCTAAACCTTTTCAAACAGG

                       
       5431 ACCAAATTGGG
          1 -CCAAATTGGG

       5442 CCGAAACGTT


Statistics
Matches: 34,  Mismatches: 2, Indels: 9
        0.76            0.04        0.20

Matches are distributed among these distances:
  29    7  0.21
  30   17  0.50
  31   10  0.29

ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29


Consensus pattern (30 bp):   
CCAAATTGGGTCTAAACCTTTTCAAACAGG
Done.