Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016206.1 Corchorus olitorius cultivar O-4 contig16239, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25191

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
357--470
58
2.0
57
89
1
174
31
21
14
32
1.93
5622--5698
22
3.5
22
85
1
93
41
9
9
40
1.68
5618--5720
43
2.4
44
86
4
138
41
10
9
37
1.73
5732--5788
20
2.7
21
83
8
71
29
12
7
50
1.66
8411--8471
27
2.3
27
83
11
72
45
0
9
44
1.37
8543--8579
4
9.2
4
100
0
74
24
0
24
51
1.49
9770--9853
36
2.4
33
77
18
89
53
10
21
14
1.70
10902--10940
13
2.8
13
88
7
51
23
2
12
61
1.43
12534--13236
351
2.0
351
84
2
919
31
19
16
33
1.94
17217--17258
15
2.8
15
82
7
50
52
4
2
40
1.35
17792--17838
13
3.8
12
78
13
51
40
0
4
55
1.19
17965--18009
17
2.6
17
85
0
63
26
48
20
4
1.68
18000--18057
16
3.7
16
79
6
57
39
34
17
8
1.80
19296--19333
10
3.9
10
82
3
51
7
5
10
76
1.15
19695--19830
68
2.0
68
94
0
236
20
11
27
41
1.86
20214--20258
18
2.5
18
79
13
56
55
13
4
26
1.57
24864--24947
42
2.0
40
90
4
132
51
7
3
38
1.47
24876--24947
21
3.4
21
69
16
58
51
8
2
37
1.47

Tables:   1

The End!