Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016207.1 Corchorus olitorius cultivar O-4 contig16240, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1969
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.30


Found at i:1270 original size:20 final size:21

Alignment explanation


    Indices: 1240--1278  Score: 71
    Period size: 20  Copynumber: 1.9  Consensus size: 21

       1230 GAAAAGTGAG

                                 
       1240 AAAAGACAAAAAAACAAAAAC
          1 AAAAGACAAAAAAACAAAAAC

                               
       1261 AAAA-ACAAAAAAACAAAA
          1 AAAAGACAAAAAAACAAAA

       1279 GGAGGCACCA


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  20   14  0.78
  21    4  0.22

ACGTcount: A:0.85, C:0.13, G:0.03, T:0.00


Consensus pattern (21 bp):   
AAAAGACAAAAAAACAAAAAC
Done.