Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016212.1 Corchorus olitorius cultivar O-4 contig16245, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 879

Length: 1465
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27


Found at i:949 original size:50 final size:47

Alignment explanation


    Indices: 847--989  Score: 162
    Period size: 49  Copynumber: 3.0  Consensus size: 47

        837 GAGCGTGCCA

                        *         *         *       *      
        847 ATCAATTTTGTCAAAAAATTGATAAAAAGTGCGATGAAAATTAAAAG
          1 ATCAATTTTGTCTAAAAATTGAGAAAAAGTGCAATGAAAAATAAAAG

                                                               
        894 ATCAATTTTGTCTTTAAAAATTGAGAAAAAGATGCAA-GTAAAAATAAAAG
          1 ATCAATTTTGTC--TAAAAATTGAGAAAAAG-TGCAATG-AAAAATAAAAG

            *           *                     *      *    
        944 TTCAATTTTGTAGTAAAAATTGAGAAAAAGTGCAGTGAAAAGTAAA
          1 ATCAATTTTGT-CTAAAAATTGAGAAAAAGTGCAATGAAAAATAAA

        990 GGATTGCTTG


Statistics
Matches: 82,  Mismatches: 8, Indels: 11
        0.81            0.08        0.11

Matches are distributed among these distances:
  47   12  0.15
  48   12  0.15
  49   34  0.41
  50   24  0.29

ACGTcount: A:0.50, C:0.06, G:0.16, T:0.28


Consensus pattern (47 bp):   
ATCAATTTTGTCTAAAAATTGAGAAAAAGTGCAATGAAAAATAAAAG
Done.