Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016213.1 Corchorus olitorius cultivar O-4 contig16246, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24568

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1130--1193
34
1.9
35
84
9
89
23
15
9
51
1.72
2765--2804
15
2.6
16
92
4
64
15
10
10
65
1.48
3937--4104
84
2.0
84
85
2
230
32
15
27
23
1.95
6705--6785
27
3.0
28
80
7
87
33
13
23
29
1.93
11085--11122
11
3.5
11
89
10
51
39
0
2
57
1.12
12702--13131
217
2.0
217
93
0
743
23
20
20
36
1.95
13789--13960
44
3.9
44
78
3
177
40
16
6
36
1.75
13860--13970
22
5.0
22
72
4
89
40
18
5
36
1.73
13923--13980
22
2.8
20
80
12
62
44
12
5
37
1.64
14049--14148
22
4.5
22
73
5
85
39
11
7
43
1.67
15376--15431
6
9.5
6
96
3
105
50
0
16
33
1.45
17878--17906
14
2.1
14
100
0
58
27
13
31
27
1.94

Tables:   1

The End!