Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016219.1 Corchorus olitorius cultivar O-4 contig16252, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83377

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2940--2990
22
2.2
24
83
16
72
41
0
0
58
0.98
2940--2988
25
2.0
25
84
8
64
40
0
0
59
0.98
3352--3385
16
2.1
17
88
5
52
0
17
0
82
0.67
4103--4247
31
4.5
31
74
10
130
19
22
24
33
1.97
12315--12356
11
3.7
11
90
3
66
0
2
16
80
0.81
12314--12356
17
2.6
16
85
10
59
0
2
16
81
0.79
12315--12356
6
7.3
6
84
10
61
0
2
16
80
0.81
20616--20709
46
2.0
46
100
0
188
44
14
12
27
1.82
20629--20701
23
3.2
23
62
27
55
45
16
12
26
1.82
24189--24216
2
14.0
2
100
0
56
50
0
0
50
1.00
25974--26001
2
14.0
2
100
0
56
50
0
0
50
1.00
26460--26609
22
6.8
22
75
6
115
44
10
11
34
1.75
26487--26614
44
2.9
45
75
8
145
43
7
14
34
1.74
26460--26630
22
7.6
22
73
12
80
42
10
12
33
1.78
26734--26977
22
11.0
22
73
7
147
32
10
18
38
1.84
26756--27003
44
5.7
43
72
8
155
31
10
17
40
1.83
26860--27003
66
2.2
65
80
6
166
32
10
15
40
1.82
32342--32378
16
2.4
15
90
4
56
51
2
0
45
1.15
32345--32390
23
2.0
23
83
4
58
56
2
0
41
1.11
34931--34987
26
2.2
27
84
12
75
47
1
5
45
1.35
43659--43690
2
16.0
2
93
0
55
53
0
0
46
1.00
44014--44096
43
1.9
43
95
0
148
30
7
14
48
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49823--49872
13
4.0
12
86
5
64
0
26
0
74
0.83
49819--49871
12
4.2
12
83
7
61
0
26
0
73
0.83
49824--49878
6
9.2
6
77
15
51
0
23
0
76
0.79
50839--50880
20
2.1
20
90
0
66
35
2
11
50
1.52
50869--50993
65
1.9
65
88
3
189
40
12
12
34
1.80
51147--51410
107
2.5
108
89
3
394
41
9
8
41
1.67
51542--52073
141
3.8
141
92
2
878
35
9
11
44
1.72
52047--52100
27
2.0
27
96
0
99
48
12
11
27
1.76
51907--52392
167
3.0
166
87
6
708
37
9
10
41
1.72
51919--52479
167
3.4
160
82
11
541
37
10
10
42
1.73
52663--52716
27
1.9
29
88
7
85
35
9
12
42
1.75
55111--56119
400
2.5
398
89
4
1504
31
11
19
37
1.88
60301--60412
20
5.9
20
64
14
67
42
11
7
38
1.69
61595--61625
15
2.1
15
100
0
62
41
32
6
19
1.77
67084--67172
16
5.9
16
69
12
71
43
11
6
38
1.67
67138--67179
20
2.1
20
90
0
66
42
11
4
40
1.63
68805--68882
41
1.9
41
97
0
147
20
15
17
46
1.84
69698--69725
2
14.0
2
100
0
56
50
0
0
50
1.00
75791--75845
28
2.0
29
86
10
80
16
10
23
49
1.77
81417--81454
19
2.0
19
94
0
67
26
2
34
36
1.71
82417--83252
47
18.1
47
88
5
1221
29
17
4
48
1.66

Tables:   1

The End!