genome.fa.s16220.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016220.1 Corchorus olitorius cultivar O-4 contig16253, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75096

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
230--263	17	1.9	18	88	5	52	5	20	11	61	1.50
2165--2194	1	30.0	1	93	0	51	0	3	0	96	0.21
9584--9651	35	1.9	35	90	0	109	36	13	20	29	1.91
13173--14055	47	19.1	48	89	6	1307	29	17	4	48	1.66
16655--16688	17	1.9	18	88	5	52	5	20	11	61	1.50
17620--17648	6	5.0	6	91	8	51	51	0	0	48	1.00
19084--19136	27	2.0	27	81	7	63	28	22	13	35	1.92
20771--20846	23	3.3	23	65	26	61	53	21	7	17	1.68
20759--20850	46	2.0	46	97	0	175	51	21	7	19	1.72
20769--20871	46	2.2	46	84	6	120	57	20	7	14	1.62
21249--21305	11	5.3	11	73	12	55	50	1	0	47	1.11
23768--23816	25	1.9	26	83	4	64	65	8	6	20	1.41
27317--27350	18	1.9	18	88	5	52	14	5	23	55	1.61
29602--29709	55	2.0	55	98	0	207	28	18	25	27	1.98
31294--31328	18	1.9	18	88	11	54	5	14	37	42	1.69
35087--35122	18	1.9	19	88	5	56	80	0	19	0	0.71
35281--35330	6	8.3	6	79	14	50	78	0	20	2	0.86
35281--35339	11	5.6	11	76	13	54	77	0	18	3	0.90
35291--35339	19	2.4	20	86	13	73	79	0	16	4	0.88
35281--35350	25	2.8	24	76	10	68	78	0	17	4	0.90
38916--38947	16	2.1	16	94	5	57	68	6	12	12	1.37
40302--40339	20	1.9	19	89	5	58	13	21	0	65	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41345--41370	13	2.0	13	100	0	52	23	15	15	46	1.83
42568--42657	42	2.1	42	85	4	119	48	5	35	10	1.60
54616--54679	32	2.0	33	93	3	112	29	12	14	43	1.81
55134--55178	22	2.2	20	84	8	54	37	17	28	15	1.91
56414--56457	18	2.5	17	88	7	61	43	11	2	43	1.53
56905--56998	45	2.2	44	85	11	124	39	20	4	36	1.72
60491--60638	38	3.9	38	90	1	217	24	18	34	22	1.96
60668--60711	6	7.3	6	100	0	88	15	0	34	50	1.45
62351--63320	476	2.0	479	96	2	1793	32	22	16	28	1.96
73830--73857	10	2.8	10	100	0	56	92	0	7	0	0.37
73830--73861	11	3.0	11	95	4	57	90	0	9	0	0.45

Tables:   1

The End!