Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016222.1 Corchorus olitorius cultivar O-4 contig16255, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44691

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1587--1680
45
2.2
44
88
7
140
40
20
3
36
1.68
7282--7313
1
32.0
1
100
0
64
100
0
0
0
0.00
15463--15537
32
2.3
32
100
0
150
25
24
16
34
1.95
16616--16673
21
2.9
20
84
5
64
31
18
12
37
1.88
19761--20070
146
2.1
146
95
0
550
37
14
10
37
1.81
20232--20271
20
2.0
20
90
4
64
37
10
5
47
1.59
20622--20665
22
1.9
22
86
9
61
34
9
0
56
1.31
23086--23332
134
1.8
133
85
2
343
37
10
2
49
1.50
28347--28373
2
13.5
2
100
0
54
51
0
0
48
1.00
28439--28557
41
2.8
42
81
5
132
19
10
29
40
1.85
28432--28557
44
3.0
42
76
11
139
21
10
29
38
1.86
28913--28943
2
15.5
2
100
0
62
51
0
0
48
1.00
33670--33708
2
19.0
2
94
5
69
48
0
2
48
1.15
34073--34150
39
2.0
39
90
5
122
30
17
15
35
1.91
34205--34244
13
3.1
13
100
0
80
32
22
22
22
1.98
35574--35608
13
2.7
13
86
0
52
57
8
5
28
1.52
37464--37790
175
1.9
173
87
2
476
34
10
10
44
1.74
37809--38079
135
2.0
134
94
2
472
38
9
9
42
1.71
38031--38523
145
3.6
132
80
9
469
33
11
10
44
1.75
38160--38523
145
2.6
142
84
3
484
32
11
10
45
1.75
38362--38696
173
1.9
175
86
4
480
34
11
8
45
1.71
39293--39337
23
2.0
22
86
4
63
71
2
2
24
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43105--43177
29
2.5
30
93
2
121
45
15
23
16
1.85
43105--43191
29
3.0
29
85
8
97
43
13
26
16
1.85
44608--44667
22
2.8
22
82
2
77
26
10
20
43
1.83
44608--44674
21
3.1
22
80
4
84
28
10
17
43
1.82

Tables:   1

The End!