Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016228.1 Corchorus olitorius cultivar O-4 contig16261, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41644

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30--74
23
2.0
23
83
12
58
42
2
17
37
1.62
2401--2456
10
5.6
10
91
0
85
35
8
16
39
1.80
3788--3857
35
2.0
36
88
2
106
60
10
17
12
1.59
4766--4798
2
16.5
2
100
0
66
0
48
0
51
1.00
4798--4822
2
12.5
2
100
0
50
48
0
0
52
1.00
6643--6672
13
2.3
13
94
0
51
0
20
0
80
0.72
7283--7313
16
1.9
16
93
0
53
35
6
22
35
1.80
7697--7795
51
1.9
52
95
2
182
54
6
7
32
1.52
8384--8417
4
8.5
4
86
0
50
2
20
0
76
0.92
13224--13277
27
2.0
27
100
0
108
29
14
33
22
1.94
18436--18482
17
2.8
18
81
12
55
74
0
21
4
0.99
20607--20756
75
2.0
75
92
0
246
39
21
13
26
1.90
29666--29704
19
2.2
19
86
9
55
64
17
0
17
1.30
38195--38280
31
2.8
31
96
0
154
37
27
23
11
1.89
38703--38740
18
2.1
18
90
9
60
44
2
0
52
1.14
39867--40454
293
2.0
293
93
1
1000
24
16
16
42
1.88

Tables:   1

The End!