genome.fa.s16229.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016229.1 Corchorus olitorius cultivar O-4 contig16262, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45001

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
626--692	21	3.2	21	64	16	57	50	14	5	28	1.66
613--693	42	1.9	42	97	0	153	46	16	7	29	1.73
759--864	56	1.9	56	88	1	160	41	4	21	32	1.74
1727--1789	29	2.2	28	85	2	81	25	31	19	23	1.98
1995--2062	27	2.5	27	92	0	109	13	27	19	39	1.89
8816--8844	2	14.5	2	100	0	58	48	0	0	51	1.00
8925--8976	27	1.9	27	92	0	86	34	26	25	13	1.93
12943--12998	21	2.6	22	80	11	62	39	8	8	42	1.68
12988--13068	22	3.7	21	79	11	74	39	9	11	39	1.74
20176--20250	36	2.1	36	100	0	150	37	24	8	30	1.84
22660--22693	17	2.0	17	88	11	52	5	5	0	88	0.64
22664--22690	14	1.9	14	100	0	54	3	7	0	88	0.61
27267--27302	17	2.1	17	94	0	63	11	36	22	30	1.89
27710--27747	20	1.9	20	88	0	58	39	18	26	15	1.91
28043--28068	3	8.7	3	100	0	52	34	30	0	34	1.58
30543--30582	19	2.2	18	91	8	64	0	30	0	70	0.88
36303--36498	22	8.9	22	71	9	87	33	15	11	39	1.84
36446--36489	23	1.9	23	90	0	70	38	18	13	29	1.89
36709--36747	21	1.9	20	89	5	60	35	0	2	61	1.10
38131--38245	22	5.1	22	79	8	106	40	15	7	36	1.77
38137--38245	23	4.8	23	80	9	91	39	15	8	36	1.78
38142--38267	68	1.9	67	86	5	182	38	15	8	37	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38144--38432	22	13.5	21	72	12	180	35	16	8	38	1.80
38513--38751	22	10.8	22	72	10	148	34	15	10	39	1.81
38513--38705	44	4.4	44	74	12	166	35	13	9	40	1.78
38514--38678	88	1.9	88	87	2	242	35	13	10	40	1.80
38803--38928	22	5.7	22	74	10	114	36	18	8	36	1.82
38796--39167	66	5.4	65	73	12	273	36	18	9	36	1.82
39013--39167	22	7.0	22	72	12	122	36	18	9	35	1.83
39331--39368	19	2.0	20	85	15	53	63	2	5	28	1.30
44830--44878	21	2.3	21	92	0	80	34	8	22	34	1.84

Tables:   1

The End!