Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016230.1 Corchorus olitorius cultivar O-4 contig16263, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53907

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100--136
18
2.1
18
100
0
74
56
0
5
37
1.22
165--189
2
12.5
2
100
0
50
52
0
0
48
1.00
4172--4230
18
3.7
18
64
29
51
30
11
38
18
1.87
4176--4225
15
3.4
15
70
25
52
30
12
40
18
1.86
4165--4271
29
3.7
29
96
1
196
31
10
42
15
1.81
4252--4320
11
6.1
11
79
12
77
34
5
49
10
1.61
4221--4317
46
2.0
46
90
9
149
34
7
46
12
1.69
4583--9814
999
5.2
997
89
1
7459
33
19
14
32
1.91
19577--19604
13
2.2
13
100
0
56
39
25
0
35
1.56
20741--20845
48
2.2
48
100
0
210
29
14
12
43
1.82
20842--20877
10
3.6
10
92
0
63
38
19
8
33
1.82
20884--20976
46
2.0
45
91
6
152
39
7
5
47
1.55
21941--21970
3
10.3
3
92
7
53
30
0
36
33
1.58
23045--23091
24
1.9
25
95
4
87
25
21
14
38
1.92
23045--23092
12
3.9
12
91
2
78
25
22
14
37
1.92
28361--28413
19
2.8
19
80
8
63
45
1
0
52
1.11
29213--29263
15
2.9
17
75
19
52
29
11
5
52
1.61
32920--32955
11
3.2
11
88
4
54
58
16
11
13
1.63
35485--35535
15
2.9
18
75
19
63
52
3
11
31
1.56
49888--49940
21
2.5
21
96
0
97
7
32
50
9
1.62
51141--51182
3
13.7
3
90
5
66
33
2
30
33
1.71

Tables:   1

The End!