Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016231.1 Corchorus olitorius cultivar O-4 contig16264, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35353

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
753--782
15
2.0
15
93
0
51
43
0
16
40
1.48
797--864
15
4.3
15
83
10
91
42
2
16
38
1.63
797--864
30
2.2
33
89
7
106
42
2
16
38
1.63
8179--8203
13
1.9
13
100
0
50
40
0
12
48
1.40
19259--19298
21
1.9
21
89
0
62
35
20
17
27
1.95
21027--21083
30
1.9
30
92
0
96
33
28
17
21
1.96
22404--22437
16
2.1
17
88
5
52
23
8
8
58
1.56
28997--29069
29
2.5
29
93
0
119
24
13
21
39
1.90
29790--29874
37
2.3
37
89
0
125
44
7
3
44
1.48
29803--29885
37
2.2
37
93
0
139
40
7
4
46
1.52
29996--30023
2
14.0
2
100
0
56
50
0
0
50
1.00

Tables:   1

The End!