Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016232.1 Corchorus olitorius cultivar O-4 contig16265, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 26585
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32


Found at i:19135 original size:93 final size:93

Alignment explanation


    Indices: 18976--19163  Score: 315
    Period size: 93  Copynumber: 2.0  Consensus size: 93

      18966 AATTAGGTAT

                                                                             
      18976 TGTACATATGAGATTATTAGAGCAACGATTGAAATGAAGTTTACACTTAAACTCCATTTGAGCCC
          1 TGTACATATGAGATTATTAGAGCAACGATTGAAATGAAGTTTACACTTAAACTCCATTTGAGCCC

                       *          *     
      19041 AAAACGGTGATGAACGGTTAAATAATGA
         66 AAAACGGTGATAAACGGTTAAACAATGA

                                    *           *             *              
      19069 TGTACATATGAGATTATTAGAGCAGCGATTGAAATGGAGTTTACACTTAAGCTCCATTTG-GACC
          1 TGTACATATGAGATTATTAGAGCAACGATTGAAATGAAGTTTACACTTAAACTCCATTTGAG-CC

                                         
      19133 CAAAACGGTGATAAACGGTTAAACAATGA
         65 CAAAACGGTGATAAACGGTTAAACAATGA

              
      19162 TG
          1 TG

      19164 AAACGGTTAT


Statistics
Matches: 89,  Mismatches: 5, Indels: 2
        0.93            0.05        0.02

Matches are distributed among these distances:
  92    1  0.01
  93   88  0.99

ACGTcount: A:0.37, C:0.14, G:0.21, T:0.28


Consensus pattern (93 bp):   
TGTACATATGAGATTATTAGAGCAACGATTGAAATGAAGTTTACACTTAAACTCCATTTGAGCCC
AAAACGGTGATAAACGGTTAAACAATGA
Done.