Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016233.1 Corchorus olitorius cultivar O-4 contig16266, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31210

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2458--2496
20
1.9
21
84
5
53
71
5
12
10
1.28
10501--10545
21
2.1
21
95
0
81
40
8
24
26
1.84
16539--16567
13
2.2
13
100
0
58
6
17
0
75
1.01
19449--19859
22
19.0
22
66
16
141
38
8
15
37
1.78
19515--19682
65
2.5
65
81
6
178
36
8
16
38
1.78
19672--19704
17
1.9
17
93
0
57
45
12
0
42
1.41
19871--19955
22
3.7
22
78
9
89
36
7
16
40
1.76
19816--20020
104
2.0
104
94
0
356
39
9
13
37
1.78
20076--20177
22
4.9
21
75
14
104
36
9
15
38
1.81
20076--20176
42
2.5
40
79
11
107
36
9
14
38
1.80
20033--20198
63
2.6
63
78
11
171
35
11
13
39
1.80
20096--20217
63
2.0
61
80
3
136
37
11
14
36
1.83
27790--27831
19
2.2
19
95
0
75
64
16
4
14
1.45
31172--31210
2
19.5
2
100
0
78
48
0
0
51
1.00

Tables:   1

The End!