Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01016234.1 Corchorus olitorius cultivar O-4 contig16267, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61430
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Found at i:378 original size:34 final size:34
Alignment explanation
Indices: 335--402 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
325 TCATAAACTC
335 ATGATCAATAAAGAAACTTACTCCTTTTGTTCTT
1 ATGATCAATAAAGAAACTTACTCCTTTTGTTCTT
369 ATGATCAATAAAGAAACTTACTCCTTTTGTTCTT
1 ATGATCAATAAAGAAACTTACTCCTTTTGTTCTT
403 TAATATCTGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.32, C:0.18, G:0.09, T:0.41
Consensus pattern (34 bp):
ATGATCAATAAAGAAACTTACTCCTTTTGTTCTT
Found at i:977 original size:30 final size:30
Alignment explanation
Indices: 943--1009 Score: 75
Period size: 30 Copynumber: 2.2 Consensus size: 30
933 TTTAGTGAGT
*
943 AAAATATTCAATTTT-ATAAACTTAAGTGA-C
1 AAAATAGTCAATTTTCAT--ACTTAAGTGACC
* *
973 AAAATCGTCAATTTTCATAGTTAAGTGACC
1 AAAATAGTCAATTTTCATACTTAAGTGACC
1003 AAAATAG
1 AAAATAG
1010 AAACTCAACT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
29 9 0.29
30 20 0.65
31 2 0.06
ACGTcount: A:0.45, C:0.12, G:0.10, T:0.33
Consensus pattern (30 bp):
AAAATAGTCAATTTTCATACTTAAGTGACC
Found at i:4829 original size:11 final size:11
Alignment explanation
Indices: 4809--4847 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
4799 TAATGCCGAA
4809 AATTATTAAAT
1 AATTATTAAAT
*
4820 AATTAATAAAT
1 AATTATTAAAT
* *
4831 ATTTATTTAAT
1 AATTATTAAAT
4842 AATTAT
1 AATTAT
4848 GATTATTTCC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (11 bp):
AATTATTAAAT
Found at i:7562 original size:24 final size:23
Alignment explanation
Indices: 7530--7575 Score: 74
Period size: 24 Copynumber: 2.0 Consensus size: 23
7520 TGTTATACTC
7530 ATGTGCATTTATATATGCACTTTG
1 ATGTGCATTTATATATGC-CTTTG
*
7554 ATGTGCATTTATATGTGCCTTT
1 ATGTGCATTTATATATGCCTTT
7576 TAAAATGTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 4 0.19
24 17 0.81
ACGTcount: A:0.22, C:0.13, G:0.17, T:0.48
Consensus pattern (23 bp):
ATGTGCATTTATATATGCCTTTG
Found at i:7569 original size:12 final size:12
Alignment explanation
Indices: 7530--7571 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
7520 TGTTATACTC
7530 ATGTGCATTTAT
1 ATGTGCATTTAT
* *
7542 ATATGCACTTT-G
1 ATGTGCA-TTTAT
7554 ATGTGCATTTAT
1 ATGTGCATTTAT
7566 ATGTGC
1 ATGTGC
7572 CTTTTAAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
11 3 0.12
12 18 0.75
13 3 0.12
ACGTcount: A:0.24, C:0.12, G:0.19, T:0.45
Consensus pattern (12 bp):
ATGTGCATTTAT
Found at i:8848 original size:20 final size:19
Alignment explanation
Indices: 8823--8865 Score: 68
Period size: 20 Copynumber: 2.2 Consensus size: 19
8813 TTTTTTTCTA
8823 TTCTTCCACCTCCTCTCTTC
1 TTCTTCCACCTCC-CTCTTC
*
8843 TTCTTCCGCCTCCCTCTTC
1 TTCTTCCACCTCCCTCTTC
8862 TTCT
1 TTCT
8866 CCCCCTTTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 10 0.45
20 12 0.55
ACGTcount: A:0.02, C:0.49, G:0.02, T:0.47
Consensus pattern (19 bp):
TTCTTCCACCTCCCTCTTC
Found at i:10165 original size:33 final size:32
Alignment explanation
Indices: 10123--10186 Score: 110
Period size: 33 Copynumber: 2.0 Consensus size: 32
10113 GCAAAAGTGC
*
10123 ATAATTAACATTGTTTTTTATTCTTGTTTTTTT
1 ATAATTAACATTGTTTCTTATTCTT-TTTTTTT
10156 ATAATTAACATTGTTTCTTATTCTTTTTTTT
1 ATAATTAACATTGTTTCTTATTCTTTTTTTT
10187 ATGCAATATC
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 6 0.20
33 24 0.80
ACGTcount: A:0.22, C:0.08, G:0.05, T:0.66
Consensus pattern (32 bp):
ATAATTAACATTGTTTCTTATTCTTTTTTTTT
Found at i:11932 original size:18 final size:15
Alignment explanation
Indices: 11893--11947 Score: 58
Period size: 18 Copynumber: 3.4 Consensus size: 15
11883 GTTTAATCAA
11893 TTTTTG-TTATAAAG
1 TTTTTGTTTATAAAG
11907 TTGTTTGTCTTGATAAAG
1 TT-TTTGT-TT-ATAAAG
11925 TTTATTGTTTATAACAG
1 TTT-TTGTTTATAA-AG
11942 TTTTTG
1 TTTTTG
11948 GAAACTGAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
14 2 0.06
15 4 0.11
16 7 0.20
17 10 0.29
18 12 0.34
ACGTcount: A:0.24, C:0.04, G:0.16, T:0.56
Consensus pattern (15 bp):
TTTTTGTTTATAAAG
Found at i:13037 original size:12 final size:12
Alignment explanation
Indices: 13020--13047 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
13010 GTACGTTTAT
13020 ACGACACGAAAC
1 ACGACACGAAAC
13032 ACGACACGAAAC
1 ACGACACGAAAC
13044 ACGA
1 ACGA
13048 ATTGCCAGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.50, C:0.32, G:0.18, T:0.00
Consensus pattern (12 bp):
ACGACACGAAAC
Found at i:15157 original size:67 final size:67
Alignment explanation
Indices: 15082--15212 Score: 262
Period size: 67 Copynumber: 2.0 Consensus size: 67
15072 ATTGTATTAT
15082 TTTCTAGGGTAAATTAAATAAATGGTGACTTAACTTTAAGTAAATTTATGTTTTGTTCAGGAAAC
1 TTTCTAGGGTAAATTAAATAAATGGTGACTTAACTTTAAGTAAATTTATGTTTTGTTCAGGAAAC
15147 TA
66 TA
15149 TTTCTAGGGTAAATTAAATAAATGGTGACTTAACTTTAAGTAAATTTATGTTTTGTTCAGGAAA
1 TTTCTAGGGTAAATTAAATAAATGGTGACTTAACTTTAAGTAAATTTATGTTTTGTTCAGGAAA
15213 ACATTGAAAT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 64 1.00
ACGTcount: A:0.36, C:0.07, G:0.17, T:0.40
Consensus pattern (67 bp):
TTTCTAGGGTAAATTAAATAAATGGTGACTTAACTTTAAGTAAATTTATGTTTTGTTCAGGAAAC
TA
Found at i:15340 original size:29 final size:28
Alignment explanation
Indices: 15298--15372 Score: 120
Period size: 29 Copynumber: 2.8 Consensus size: 28
15288 AAATTGTCTT
15298 AAATAAACTAATTACAAACTAAACAAAG
1 AAATAAACTAATTACAAACTAAACAAAG
15326 AAAATAAACTAATTACAAACTAAACAAAG
1 -AAATAAACTAATTACAAACTAAACAAAG
15355 AAATAAA-TAA--ACAAACTA
1 AAATAAACTAATTACAAACTA
15373 TTAAACCCAC
Statistics
Matches: 46, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
25 8 0.17
27 3 0.07
28 7 0.15
29 28 0.61
ACGTcount: A:0.67, C:0.13, G:0.03, T:0.17
Consensus pattern (28 bp):
AAATAAACTAATTACAAACTAAACAAAG
Found at i:16708 original size:22 final size:22
Alignment explanation
Indices: 16667--16708 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
16657 GACAAACCTG
*
16667 TAACCCGAATGACCCGAGAAGT
1 TAACCCGAATGACCCAAGAAGT
*
16689 TAACCCGAATGATCCAAGAA
1 TAACCCGAATGACCCAAGAA
16709 TATTATAAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.40, C:0.26, G:0.19, T:0.14
Consensus pattern (22 bp):
TAACCCGAATGACCCAAGAAGT
Found at i:17298 original size:16 final size:16
Alignment explanation
Indices: 17277--17310 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
17267 GACCCAAAAA
*
17277 ACCCAAAAGCCGAATG
1 ACCCAAAACCCGAATG
*
17293 ACCCAAAACCCGAGTG
1 ACCCAAAACCCGAATG
17309 AC
1 AC
17311 TTTAGGCCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.41, C:0.35, G:0.18, T:0.06
Consensus pattern (16 bp):
ACCCAAAACCCGAATG
Found at i:18602 original size:105 final size:102
Alignment explanation
Indices: 18422--18627 Score: 315
Period size: 105 Copynumber: 2.0 Consensus size: 102
18412 TAATATATCT
* *
18422 AAGTTTTTTAATAAAATTAGCAAAATGATAAAAATAAAATAGGTATAAGGATATTAGATTTAATT
1 AAGTATTTTAATAAAATTAGCAAAATGATAAAAATAAAATAGGTATAAGGATATTAGATTTAATC
*
18487 AAATAAAAATAGAGTTTTTAGTTGAGTAAAACTATAA
66 AAATAAAAATAGAGTTTTTAGTTGAGTAAAAATATAA
* * *
18524 AAGTATTTTAATTAAAA-TAGTAAAATGGTAAAAATAAAATAGTATTTATAAGGATATTAGATTT
1 AAGTATTTTAA-TAAAATTAGCAAAATGATAAAAATAAAATAG---GTATAAGGATATTAGATTT
18588 AATCAAATAAAAATAGAGTTTTTAGTTGAGTAAAAATATA
62 AATCAAATAAAAATAGAGTTTTTAGTTGAGTAAAAATATA
18628 CAAATTTAAG
Statistics
Matches: 94, Mismatches: 6, Indels: 5
0.90 0.06 0.05
Matches are distributed among these distances:
102 33 0.35
103 5 0.05
105 56 0.60
ACGTcount: A:0.51, C:0.01, G:0.13, T:0.35
Consensus pattern (102 bp):
AAGTATTTTAATAAAATTAGCAAAATGATAAAAATAAAATAGGTATAAGGATATTAGATTTAATC
AAATAAAAATAGAGTTTTTAGTTGAGTAAAAATATAA
Found at i:18892 original size:31 final size:30
Alignment explanation
Indices: 18857--18933 Score: 93
Period size: 29 Copynumber: 2.6 Consensus size: 30
18847 ATACCGTACA
*
18857 GGTCCCTCTACTTACAAAAAAGGATCAATTT
1 GGTCCCTCTACTTACAAAAAAGG-TCAATAT
* **
18888 GGTCCCTCTAC-TATAAAAACTGTCAATAT
1 GGTCCCTCTACTTACAAAAAAGGTCAATAT
*
18917 GATCCCTCTACTTACAA
1 GGTCCCTCTACTTACAA
18934 TTTGGTGTCG
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
29 16 0.41
30 12 0.31
31 11 0.28
ACGTcount: A:0.34, C:0.26, G:0.10, T:0.30
Consensus pattern (30 bp):
GGTCCCTCTACTTACAAAAAAGGTCAATAT
Found at i:19975 original size:2 final size:2
Alignment explanation
Indices: 19968--19996 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
19958 CATCATCAAC
19968 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
19997 ATTAAACCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:30468 original size:3 final size:3
Alignment explanation
Indices: 30462--30486 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
30452 TATCTAATAC
30462 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
30487 CTATTATTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:33123 original size:1 final size:1
Alignment explanation
Indices: 33117--33148 Score: 64
Period size: 1 Copynumber: 32.0 Consensus size: 1
33107 AATAAGAAAT
33117 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
33149 CAGGTCGGCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 31 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:36061 original size:36 final size:37
Alignment explanation
Indices: 36014--36084 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
36004 TACCATTGTG
*
36014 GAGAATTAGAATGATA-AATAATTAGAAACTAATAGA
1 GAGAATTAGAATGATAGAATAATTAGAAACCAATAGA
36050 GAGAATTAGAATGATAGAATAATTAGAAACCAATA
1 GAGAATTAGAATGATAGAATAATTAGAAACCAATA
36085 CCTGTTGACT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
36 16 0.48
37 17 0.52
ACGTcount: A:0.55, C:0.04, G:0.17, T:0.24
Consensus pattern (37 bp):
GAGAATTAGAATGATAGAATAATTAGAAACCAATAGA
Found at i:40120 original size:17 final size:17
Alignment explanation
Indices: 40098--40132 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
40088 CTAGAGCATC
40098 CACGCAAGAATTATCTT
1 CACGCAAGAATTATCTT
40115 CACGCAAGAATTATCTT
1 CACGCAAGAATTATCTT
40132 C
1 C
40133 CTGGAAAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.26, G:0.11, T:0.29
Consensus pattern (17 bp):
CACGCAAGAATTATCTT
Found at i:40763 original size:53 final size:53
Alignment explanation
Indices: 40683--40783 Score: 193
Period size: 53 Copynumber: 1.9 Consensus size: 53
40673 GATTAGCTAC
*
40683 ATCACTGAAACGCTAATCTATGAGCCAACGAACTCCTTCCCCAACAATTACAA
1 ATCACTGAAACGATAATCTATGAGCCAACGAACTCCTTCCCCAACAATTACAA
40736 ATCACTGAAACGATAATCTATGAGCCAACGAACTCCTTCCCCAACAAT
1 ATCACTGAAACGATAATCTATGAGCCAACGAACTCCTTCCCCAACAAT
40784 GAACTCCTTC
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 47 1.00
ACGTcount: A:0.38, C:0.32, G:0.10, T:0.21
Consensus pattern (53 bp):
ATCACTGAAACGATAATCTATGAGCCAACGAACTCCTTCCCCAACAATTACAA
Found at i:40789 original size:19 final size:19
Alignment explanation
Indices: 40765--40801 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
40755 ATGAGCCAAC
40765 GAACTCCTTCCCCAACAAT
1 GAACTCCTTCCCCAACAAT
40784 GAACTCCTTCCCCAACAA
1 GAACTCCTTCCCCAACAA
40802 ACACAATTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.43, G:0.05, T:0.19
Consensus pattern (19 bp):
GAACTCCTTCCCCAACAAT
Found at i:44444 original size:16 final size:16
Alignment explanation
Indices: 44425--44455 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
44415 AATGATAATT
*
44425 TTAATAATAATTATTC
1 TTAAAAATAATTATTC
44441 TTAAAAATAATTATT
1 TTAAAAATAATTATT
44456 ATTTATTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (16 bp):
TTAAAAATAATTATTC
Found at i:44761 original size:15 final size:15
Alignment explanation
Indices: 44743--44775 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
44733 AAAACACACT
*
44743 AACTCAACTGACTCA
1 AACTAAACTGACTCA
44758 AACTAAACTGACTCA
1 AACTAAACTGACTCA
44773 AAC
1 AAC
44776 ATCCAAGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.45, C:0.30, G:0.06, T:0.18
Consensus pattern (15 bp):
AACTAAACTGACTCA
Found at i:45908 original size:22 final size:22
Alignment explanation
Indices: 45883--45930 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
45873 TTTGAATAAA
45883 TCTTTTGAACAATTCTATAATT
1 TCTTTTGAACAATTCTATAATT
45905 TCTTTTGAACAATTCTATAATT
1 TCTTTTGAACAATTCTATAATT
45927 TCTT
1 TCTT
45931 GAAAATGGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.29, C:0.15, G:0.04, T:0.52
Consensus pattern (22 bp):
TCTTTTGAACAATTCTATAATT
Found at i:46269 original size:2 final size:2
Alignment explanation
Indices: 46264--46294 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
46254 TTCAAATTGA
46264 AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
46295 CGATTCTTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:50687 original size:2 final size:2
Alignment explanation
Indices: 50676--50708 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
50666 CATTTTGTCT
50676 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
50709 AGTGAAAGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:60608 original size:128 final size:129
Alignment explanation
Indices: 60376--60635 Score: 375
Period size: 128 Copynumber: 2.0 Consensus size: 129
60366 ATTTAAGAAA
*
60376 TATATTTATAAAATTCTAATATATATAAGTTTTTAAAATAAAATAGTAAAATGGTAAAAATAAAA
1 TATATTTAAAAAATTCTAATATATATAAGTTTTTAAAATAAAATAGTAAAATGGTAAAAATAAAA
* *
60441 TAGGTATAAGGATATTAGATTTAATTAAATAAAAATAGAGTTTTTAGTTGAGTAAAACTGTAAAA
66 TA-G-ATAAGAATATTAGATTTAATTAAATAAAAATAGAGTTTTTAGTTGAGTAAAACTATAAAA
60506 G
129 G
* *
60507 TATATTTAAAAAATATTCTAATATATATAAGTTTTTTTAATTAAAATAGTAAAATGGTAAAAA-A
1 TATATTT-AAAAA-ATTCTAATATATATAAG-TTTTTAAAATAAAATAGTAAAATGGTAAAAATA
** *
60571 TCATA-A-AA-AATATTAGATTTAATTAAATAAAATTAGAGTTTTTAGTTGAGTAAAACTATAAA
63 AAATAGATAAGAATATTAGATTTAATTAAATAAAAATAGAGTTTTTAGTTGAGTAAAACTATAAA
60633 AG
128 AG
60635 T
1 T
60636 TTAAACAATG
Statistics
Matches: 118, Mismatches: 8, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
128 54 0.46
129 2 0.02
130 1 0.01
131 7 0.06
132 4 0.03
133 21 0.18
134 29 0.25
ACGTcount: A:0.50, C:0.02, G:0.10, T:0.37
Consensus pattern (129 bp):
TATATTTAAAAAATTCTAATATATATAAGTTTTTAAAATAAAATAGTAAAATGGTAAAAATAAAA
TAGATAAGAATATTAGATTTAATTAAATAAAAATAGAGTTTTTAGTTGAGTAAAACTATAAAAG
Done.