Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016235.1 Corchorus olitorius cultivar O-4 contig16268, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28080

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
230--268
14
2.9
13
80
3
51
53
2
2
41
1.28
254--508
131
2.0
127
91
6
419
49
1
10
38
1.47
260--516
123
2.0
127
89
5
360
50
1
10
37
1.46
869--964
48
2.0
48
91
0
156
56
9
7
27
1.57
1313--1386
36
2.1
36
97
0
139
29
18
17
33
1.94
3953--4046
46
2.0
47
93
2
163
34
7
23
35
1.83
5995--6028
10
3.4
10
91
0
59
38
17
11
32
1.86
7020--7055
12
2.8
13
95
4
65
25
25
13
36
1.93
7020--7062
12
3.5
12
84
6
50
27
20
16
34
1.94
8827--8926
30
3.3
29
73
9
76
27
17
23
33
1.96
10700--10740
19
2.1
20
86
4
57
21
0
7
70
1.11
13229--13271
6
7.3
6
82
12
54
2
0
13
83
0.74
13237--13271
11
3.2
11
91
0
61
2
0
14
82
0.77
13220--13271
22
2.4
22
87
6
70
1
1
13
82
0.84
14468--14534
21
3.2
21
64
16
57
50
14
5
28
1.66
14455--14535
42
1.9
42
94
0
144
48
14
7
29
1.71
14601--14715
56
2.0
57
89
1
178
40
1
23
34
1.65
16854--16886
7
5.0
7
96
3
52
0
9
0
90
0.44

Tables:   1

The End!