Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016240.1 Corchorus olitorius cultivar O-4 contig16273, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  145277

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3496--3771
67
4.3
64
94
3
422
35
16
16
31
1.91
3496--3771
129
2.2
123
89
8
412
35
16
16
31
1.91
14333--14394
29
2.1
29
84
0
79
37
4
27
30
1.78
40799--40876
29
2.5
30
77
10
86
32
24
10
33
1.89
42217--42243
12
2.2
12
100
0
54
0
22
59
18
1.38
47267--47304
14
2.8
14
92
4
60
39
15
10
34
1.82
49028--49076
20
2.5
20
100
0
98
22
12
28
36
1.90
49534--49574
20
2.0
20
100
0
82
34
17
14
34
1.90
49997--50036
21
1.9
21
89
0
62
27
30
22
20
1.98
58508--58549
6
7.0
6
100
0
84
66
16
0
16
1.25
64339--64369
14
2.2
14
94
0
53
64
0
32
3
1.09
64967--65003
2
18.0
2
94
5
65
48
0
2
48
1.15
67329--67370
11
3.4
12
80
12
50
52
2
0
45
1.13
71390--71433
22
2.0
22
81
4
52
22
11
2
63
1.38
71215--71468
122
2.0
123
88
6
375
37
10
2
50
1.49
71454--71492
14
2.9
13
80
3
51
41
2
2
53
1.28
73668--73728
32
1.9
32
93
0
104
50
6
16
26
1.69
74482--74551
24
2.9
24
89
8
115
37
8
11
42
1.72
83629--83663
18
2.0
17
88
5
52
45
0
54
0
0.99
84057--84116
26
2.3
27
94
2
104
51
6
20
21
1.70
101078--101103
7
3.7
7
100
0
52
30
11
46
11
1.76
103305--103337
16
2.0
17
88
5
50
51
6
21
21
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111273--111500
114
2.0
114
92
0
375
28
15
34
21
1.94
117970--118006
16
2.3
16
85
0
56
32
27
0
40
1.57
120125--120178
26
2.1
26
100
0
108
33
11
7
48
1.67
124037--124061
6
4.2
6
100
0
50
20
16
32
32
1.94
129038--129101
31
2.1
31
100
0
128
51
6
6
35
1.52
129572--129599
8
3.5
8
100
0
56
0
0
10
89
0.49
131588--131619
9
3.8
9
84
16
50
56
25
0
18
1.42
131582--131619
16
2.4
16
100
0
76
55
26
0
18
1.43
133262--133323
31
2.0
31
90
0
97
29
20
6
43
1.77
133359--133543
93
2.0
93
92
0
307
32
12
3
51
1.55
138996--139111
36
3.2
37
72
15
132
54
4
4
37
1.40
138968--139109
72
1.9
74
95
4
261
53
4
4
36
1.44
139106--139168
22
2.8
23
79
15
60
57
3
0
39
1.15
138988--139167
72
2.5
73
80
12
192
55
3
3
37
1.35
139121--139168
24
2.0
23
84
11
62
58
0
0
41
0.98
139657--139730
28
2.5
30
86
6
98
32
17
10
39
1.84
139863--139928
31
2.1
32
86
5
91
39
12
15
33
1.84
142921--142985
2
32.5
2
77
11
53
49
1
4
44
1.32
143340--143377
16
2.4
16
100
0
76
13
10
13
63
1.53

Tables:   1

The End!