Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016250.1 Corchorus olitorius cultivar O-4 contig16283, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31936

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
298--488
25
7.6
25
84
4
217
23
19
27
29
1.98
298--488
75
2.5
75
85
6
253
23
19
27
29
1.98
747--779
16
2.1
16
94
0
57
36
12
6
45
1.66
24098--24145
11
4.2
11
81
7
60
79
16
4
0
0.89
24098--24146
6
8.3
6
82
13
57
79
16
4
0
0.88
27277--27319
3
14.3
3
100
0
86
32
0
0
67
0.91
28752--28804
24
2.4
21
82
17
79
9
47
11
32
1.71
28758--28804
24
2.0
24
100
0
94
8
48
12
29
1.71
28904--28977
36
2.1
36
84
5
96
13
28
18
39
1.89
29961--30003
14
3.1
14
89
0
59
25
34
23
16
1.95

Tables:   1

The End!