Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016253.1 Corchorus olitorius cultivar O-4 contig16286, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2177
ACGTcount: A:0.41, C:0.16, G:0.17, T:0.26


Found at i:1440 original size:18 final size:21

Alignment explanation


    Indices: 1417--1456  Score: 59
    Period size: 18  Copynumber: 2.0  Consensus size: 21

       1407 ATTTCAAACC

                                 
       1417 AAAAAAGA-A-AG-GAAGAAA
          1 AAAAAAGAGACAGAGAAGAAA

                                 
       1435 AAAAAAGAGACAGAGAAGAAA
          1 AAAAAAGAGACAGAGAAGAAA

             
       1456 A
          1 A

       1457 TAACCGAATA


Statistics
Matches: 19,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  18    8  0.42
  19    1  0.05
  20    2  0.11
  21    8  0.42

ACGTcount: A:0.75, C:0.03, G:0.23, T:0.00


Consensus pattern (21 bp):   
AAAAAAGAGACAGAGAAGAAA

Done.