Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016254.1 Corchorus olitorius cultivar O-4 contig16287, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71624

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7365--7410
24
1.9
24
86
0
65
30
30
19
19
1.97
15679--15738
31
2.0
31
83
3
77
26
15
15
43
1.85
21663--21698
18
2.0
18
100
0
72
38
5
27
27
1.79
21752--21841
29
3.0
29
73
6
90
32
14
16
36
1.89
21727--21887
60
2.7
59
85
4
216
30
15
16
37
1.89
21723--21827
31
3.5
31
72
5
97
27
13
19
40
1.88
31927--31976
26
1.9
26
100
0
100
34
36
4
26
1.75
42260--42293
17
2.1
17
88
5
52
38
0
8
52
1.33
42396--42420
13
1.9
13
100
0
50
36
0
0
64
0.94
42404--42443
13
2.9
14
85
11
55
45
0
0
55
0.99
43728--43778
26
2.0
26
100
0
102
19
7
19
52
1.70
46470--46536
30
2.1
32
86
8
93
47
1
5
44
1.36
49155--49220
31
2.2
31
91
5
109
50
13
16
19
1.78
49350--49491
31
4.6
31
81
5
164
32
16
12
38
1.86
49350--49491
60
2.3
62
84
3
180
32
16
12
38
1.86
49622--49652
16
1.9
16
100
0
62
48
0
19
32
1.49
50517--50597
31
2.6
31
86
0
99
38
8
17
35
1.80
50716--50782
31
2.2
31
92
5
111
20
19
11
47
1.81
59336--59832
247
2.0
246
96
0
922
29
21
16
31
1.96

Tables:   1

The End!