genome.fa.s16255.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016255.1 Corchorus olitorius cultivar O-4 contig16288, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  275281

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24718--24779	31	2.1	28	91	8	97	56	14	8	20	1.64
27295--27329	11	3.2	11	83	0	52	77	17	5	0	0.96
29942--29974	2	16.5	2	100	0	66	51	0	0	48	1.00
31668--31721	2	27.0	2	88	7	83	48	1	1	48	1.23
31968--32047	41	2.0	41	89	0	124	43	16	11	28	1.82
32428--32458	2	15.5	2	100	0	62	51	0	0	48	1.00
51967--52021	27	2.0	27	100	0	110	25	21	18	34	1.96
62304--62332	11	2.7	11	94	5	51	86	6	0	6	0.72
71825--71857	1	33.0	1	100	0	66	0	0	0	100	0.00
78475--78514	6	6.7	6	83	11	55	0	17	2	80	0.83
94100--94175	28	2.5	30	81	8	84	30	27	13	28	1.94
94471--94543	29	2.5	30	88	4	112	34	9	24	31	1.88
97735--97769	3	11.7	3	100	0	70	68	0	31	0	0.90
105237--105263	6	4.5	6	100	0	54	33	14	18	33	1.92
108372--108406	10	3.3	10	85	14	52	45	0	2	51	1.16
108365--108406	12	3.6	11	82	17	50	47	0	2	50	1.14
128126--128637	74	7.0	74	95	2	885	30	19	10	40	1.85
131117--131147	15	2.1	15	93	0	53	48	22	16	12	1.80
146076--146110	16	2.2	16	89	0	52	25	37	0	37	1.57
157334--157561	56	4.1	56	93	0	366	45	11	15	27	1.81
157383--157530	28	5.2	29	65	28	104	45	10	16	27	1.80
160901--160991	31	2.9	31	96	0	164	19	23	25	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
161103--161159	28	2.0	28	96	0	105	19	17	22	40	1.91
161146--161265	32	3.9	32	79	12	160	16	5	25	51	1.67
161168--161222	17	3.4	17	70	10	60	12	3	30	52	1.56
161300--161431	38	3.3	38	67	22	115	31	3	13	52	1.56
161249--161502	84	3.0	84	98	0	481	30	2	14	51	1.56
161302--161439	46	3.2	46	61	23	116	28	2	13	54	1.54
164905--165042	69	2.0	69	98	0	267	26	13	18	42	1.86
169717--169758	19	2.3	18	84	8	57	35	2	0	61	1.09
170316--170360	22	2.0	22	91	0	72	13	26	8	51	1.70
172771--172873	2	51.0	2	78	16	106	44	2	3	48	1.36
174045--174196	75	2.0	75	93	0	259	32	14	5	47	1.68
176812--177045	116	2.0	117	94	1	409	51	0	14	32	1.48
176928--177117	106	1.8	103	88	3	290	51	2	13	33	1.53
177359--177528	89	1.9	89	100	0	340	33	20	10	36	1.86
178234--178293	5	12.0	5	100	0	120	60	0	0	40	0.97
179062--179086	2	12.5	2	100	0	50	48	0	0	52	1.00
179356--179411	28	2.0	28	96	0	103	44	14	19	21	1.86
197954--197978	13	1.9	13	100	0	50	40	0	12	48	1.40
198712--199009	150	2.0	151	86	3	413	33	19	14	33	1.91
198863--199522	199	3.3	197	88	3	961	34	18	13	33	1.90
201310--201340	2	15.5	2	100	0	62	51	0	0	48	1.00
201846--201879	16	2.0	18	88	11	54	50	0	17	32	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
202050--202097	24	2.1	24	88	7	73	45	22	2	29	1.64
202195--202254	29	2.1	29	96	0	111	43	3	28	25	1.70
204987--205017	16	1.9	16	100	0	62	32	6	0	61	1.21
205355--205950	198	3.0	199	91	1	910	33	17	13	35	1.90
216614--216647	17	2.0	17	88	11	52	35	11	23	29	1.90
224486--224562	29	2.6	29	81	2	91	15	24	27	32	1.95
226126--226185	19	3.3	19	68	27	58	46	8	8	36	1.64
233649--233686	18	2.1	18	100	0	76	50	10	18	21	1.76
236654--236687	17	2.0	17	88	0	50	0	5	8	85	0.75
241051--241094	21	2.1	21	87	8	63	63	13	11	11	1.52
242049--242089	22	1.9	21	85	5	55	41	2	0	56	1.13
242549--242584	2	18.0	2	100	0	72	50	0	0	50	1.00
262767--262862	46	2.1	46	96	0	174	43	15	14	26	1.85
262790--262861	24	3.1	24	65	15	69	45	13	16	23	1.83
262773--262886	46	2.7	41	86	8	149	41	14	13	30	1.84
270490--270544	28	2.0	28	85	7	76	23	20	7	49	1.74
271767--271893	62	2.0	62	100	0	254	42	7	14	35	1.74
273144--273189	23	2.0	23	100	0	92	17	21	8	52	1.71
273585--273659	37	2.0	37	94	0	132	40	10	12	37	1.77

Tables:   1

The End!