Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016257.1 Corchorus olitorius cultivar O-4 contig16290, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1706
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.33


Found at i:601 original size:15 final size:15

Alignment explanation


    Indices: 564--637  Score: 112
    Period size: 15  Copynumber: 4.9  Consensus size: 15

        554 CCTTTGAAAC

                   *    *  
        564 CTAAAATTCTGAGTA
          1 CTAAAATGCTGAATA

                            
        579 CTTAAAATGCTGAATA
          1 C-TAAAATGCTGAATA

                           
        595 CTAAAATGCTGAATA
          1 CTAAAATGCTGAATA

                           
        610 CTAAAATGCTGAATA
          1 CTAAAATGCTGAATA

                 *       
        625 CTAAAGTGCTGAA
          1 CTAAAATGCTGAA

        638 AGGTTATCAA


Statistics
Matches: 55,  Mismatches: 3, Indels: 2
        0.92            0.05        0.03

Matches are distributed among these distances:
  15   42  0.76
  16   13  0.24

ACGTcount: A:0.43, C:0.14, G:0.15, T:0.28


Consensus pattern (15 bp):   
CTAAAATGCTGAATA

Done.