Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016261.1 Corchorus olitorius cultivar O-4 contig16294, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34339

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
330--405
36
2.1
36
85
4
100
32
22
14
30
1.94
530--715
13
14.8
13
67
18
92
32
23
8
35
1.85
641--694
15
3.9
15
74
18
62
25
22
11
40
1.87
524--643
37
3.2
37
92
0
195
36
23
8
31
1.84
619--710
26
3.7
24
87
9
107
27
23
9
39
1.86
628--698
26
2.7
26
97
0
133
26
22
11
39
1.88
2504--3135
318
2.0
313
81
6
749
34
18
14
32
1.91
1770--4204
329
7.5
326
76
12
1667
35
15
14
34
1.88
2094--4206
657
3.2
658
77
11
1516
35
15
14
34
1.87
4557--5213
326
2.0
328
83
5
835
37
15
14
32
1.88
13612--13720
57
1.9
57
98
0
209
34
25
1
37
1.67
14809--14896
45
2.0
43
84
6
115
42
20
4
32
1.72
16444--16536
31
2.9
32
93
3
161
34
11
22
31
1.90
19566--19613
19
2.6
19
78
15
55
45
0
2
52
1.12
21355--21460
51
2.1
50
82
8
126
21
22
13
42
1.87

Tables:   1

The End!