Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016263.1 Corchorus olitorius cultivar O-4 contig16296, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40468

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39--93
24
2.3
24
79
14
69
63
9
20
7
1.47
130--172
21
2.0
21
100
0
86
39
9
23
27
1.85
1328--1360
2
16.5
2
93
0
57
45
0
3
51
1.16
2353--2381
2
14.5
2
100
0
58
51
48
0
0
1.00
2311--2446
71
1.9
71
100
0
272
41
28
8
20
1.82
6676--6727
26
2.0
26
84
0
68
21
11
5
61
1.50
9441--9554
11
10.8
11
68
9
67
50
1
3
43
1.29
12982--13017
18
1.9
19
94
5
65
61
0
0
38
0.96
14270--14320
21
2.6
21
84
9
72
35
13
37
13
1.85
16302--16461
79
2.0
79
100
0
320
23
8
29
38
1.85
17681--17705
2
12.5
2
100
0
50
52
0
0
48
1.00
18896--18947
27
1.9
27
92
0
86
32
11
28
26
1.91
19783--19821
17
2.3
17
100
0
78
23
10
10
56
1.63
22702--22737
4
9.2
4
93
6
65
77
0
0
22
0.76
22900--22976
21
3.9
21
83
13
117
35
44
3
16
1.67
24290--24561
136
2.0
136
99
0
535
32
20
23
23
1.98
26205--26239
2
17.5
2
100
0
70
51
0
0
48
1.00
29593--29777
52
3.5
52
89
1
289
35
15
21
27
1.94
29780--29828
23
2.1
23
88
7
73
44
8
12
34
1.71
29839--29873
16
2.3
15
90
5
52
17
0
14
68
1.21
29839--29877
17
2.4
17
87
8
55
20
0
15
64
1.30
36882--37076
108
1.8
107
86
5
286
38
13
10
36
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38146--38199
11
5.4
11
79
20
73
37
0
0
62
0.95
38137--38208
28
2.6
28
95
0
126
37
0
1
61
1.05
38152--38194
17
2.6
17
92
3
70
34
0
0
65
0.93
40421--40460
2
20.5
2
87
5
55
42
5
0
52
1.23
40417--40460
8
5.4
8
91
5
61
40
6
0
52
1.28

Tables:   1

The End!