Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016267.1 Corchorus olitorius cultivar O-4 contig16300, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50407

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
326--466
49
2.9
47
76
11
151
29
15
5
49
1.67
13329--13390
32
2.0
31
87
9
90
32
16
8
43
1.77
14378--14449
35
2.1
35
100
0
144
41
13
16
27
1.87
26576--26613
3
12.7
3
83
10
51
0
31
5
63
1.17
30227--30270
2
24.0
2
78
17
51
50
0
2
47
1.13
30227--30270
7
6.0
8
77
17
51
50
0
2
47
1.13
31845--31891
22
2.1
22
88
7
69
51
2
2
44
1.25
31888--31931
18
2.5
17
82
13
54
84
2
6
6
0.86
33585--33618
16
2.1
16
89
10
52
50
0
0
50
1.00
33586--33627
20
2.0
21
86
4
59
47
2
0
50
1.14
33709--33778
29
2.3
31
74
13
74
38
22
14
24
1.91
50370--50397
2
14.0
2
100
0
56
50
0
50
0
1.00

Tables:   1

The End!