Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016269.1 Corchorus olitorius cultivar O-4 contig16302, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4110
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32


Found at i:1874 original size:23 final size:26

Alignment explanation


    Indices: 1824--1872  Score: 66
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       1814 CATTTTTACC

                         *   *        
       1824 TAATCAATTTAATTTTTTTGTTCAAA
          1 TAATCAATTTAATATTTGTGTTCAAA

                                     
       1850 TAATCAATTTAA-ATTTGT-TTCAA
          1 TAATCAATTTAATATTTGTGTTCAA

       1873 TAGTATGACG


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  24    5  0.24
  25    4  0.19
  26   12  0.57

ACGTcount: A:0.37, C:0.08, G:0.04, T:0.51


Consensus pattern (26 bp):   
TAATCAATTTAATATTTGTGTTCAAA
Done.