Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016273.1 Corchorus olitorius cultivar O-4 contig16306, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120246

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3358--3417
16
3.8
15
74
10
57
5
18
41
35
1.72
3358--3447
32
2.8
32
89
3
128
6
15
41
36
1.74
3373--3425
16
3.3
16
76
10
63
7
16
43
32
1.76
3580--3626
13
3.8
12
78
13
51
55
4
0
40
1.19
5412--5442
10
3.1
10
95
0
53
87
0
12
0
0.55
5409--5440
16
2.0
16
93
0
55
90
0
9
0
0.45
22158--22199
15
2.7
15
92
3
66
64
14
9
11
1.50
27163--27979
405
2.0
405
96
0
1501
22
20
30
25
1.99
29673--29934
107
2.5
105
88
3
368
43
8
6
40
1.62
31693--31806
56
2.0
56
94
0
201
34
24
1
39
1.66
44996--45025
2
15.0
2
100
0
60
50
0
0
50
1.00
55662--55694
15
2.2
15
100
0
66
27
30
18
24
1.98
82082--82137
28
2.0
28
92
0
94
48
8
8
33
1.66
86013--86052
21
2.0
22
85
14
59
15
25
7
52
1.68
92064--92120
6
9.5
6
96
0
96
29
38
0
31
1.58
103141--103239
31
3.3
31
81
2
94
28
15
27
29
1.96
107126--107168
22
2.0
22
100
0
86
27
13
30
27
1.95
107364--107421
30
1.9
30
86
6
82
43
20
15
20
1.88
108451--108523
31
2.4
30
82
15
80
23
9
21
45
1.81
108875--108911
19
2.0
19
94
5
67
32
0
0
67
0.91
108881--108922
19
2.2
19
86
0
57
38
2
0
59
1.10
108997--109035
19
2.1
19
95
0
69
30
7
0
61
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
113622--113693
28
2.6
27
75
16
76
36
13
25
25
1.93
114603--114638
17
2.1
17
89
0
54
0
27
0
72
0.85
114729--114780
23
2.3
22
86
3
68
5
15
0
78
0.92
117221--119132
333
5.8
328
78
8
1656
37
14
14
33
1.87
117012--119132
660
3.2
651
83
5
2162
37
14
14
33
1.87
119482--119511
15
1.9
16
93
6
53
53
3
0
43
1.17
119651--119688
13
3.2
13
82
17
55
57
0
18
23
1.40

Tables:   1

The End!