Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016274.1 Corchorus olitorius cultivar O-4 contig16307, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  137053

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4417--4456
1
40.0
1
92
0
53
92
0
5
2
0.45
11072--11116
23
2.0
23
100
0
90
42
22
4
31
1.73
13344--13381
19
2.0
19
90
10
60
39
5
7
47
1.55
15664--15706
21
2.1
21
91
8
72
62
0
0
37
0.95
34574--34621
17
2.9
16
81
9
60
4
6
12
77
1.11
40660--40714
26
2.1
26
96
0
101
38
20
14
27
1.91
41798--41863
33
2.0
33
96
0
123
31
12
31
24
1.92
42438--42523
42
2.0
42
97
0
163
25
41
17
15
1.88
43670--43714
24
1.9
23
86
13
65
48
2
24
24
1.62
48045--48087
20
2.2
20
86
0
59
13
23
18
44
1.86
50421--50459
18
2.1
19
90
4
62
51
23
10
15
1.73
53602--53644
20
2.2
20
86
0
59
13
23
18
44
1.86
75708--75778
28
2.5
28
97
0
133
43
16
5
33
1.72
98641--98724
41
2.1
40
80
10
91
4
22
3
69
1.23
107246--107332
42
2.1
42
100
0
174
26
21
19
32
1.97
107249--107317
21
3.2
23
61
23
58
24
24
18
31
1.98
109161--109242
40
2.0
40
92
0
137
42
10
19
26
1.84
112135--112175
21
2.0
20
90
9
66
19
0
21
58
1.39
112582--112835
131
1.9
131
85
7
354
50
1
9
38
1.43
117028--117055
8
3.5
8
100
0
56
0
0
10
89
0.49
130704--130741
20
1.9
20
94
0
67
26
13
18
42
1.87
136311--136368
19
2.9
19
84
5
71
29
20
12
37
1.89

Tables:   1

The End!