Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016275.1 Corchorus olitorius cultivar O-4 contig16308, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31210

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--27
2
13.5
2
100
0
54
48
0
0
51
1.00
102--135
2
18.0
2
88
11
54
47
0
0
52
1.00
5542--5576
1
35.0
1
100
0
70
0
0
0
100
0.00
15448--15486
16
2.4
16
100
0
78
35
43
0
20
1.52
18687--19076
138
2.8
140
85
3
522
27
23
23
25
2.00
21373--21414
21
2.0
21
100
0
84
47
9
9
33
1.68
26317--26616
63
4.9
62
68
12
197
18
9
54
19
1.69
26419--26622
57
3.5
57
71
7
183
17
9
55
17
1.68
26312--26719
120
3.3
120
86
3
487
16
10
53
19
1.70
26777--26814
12
3.1
13
81
14
53
15
0
71
13
1.16
27798--27835
16
2.3
17
81
9
51
13
15
13
57
1.65
29871--29906
16
2.2
16
100
0
72
22
16
25
36
1.94
30493--30591
26
3.8
26
93
4
166
18
9
19
53
1.70

Tables:   1

The End!