Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016277.1 Corchorus olitorius cultivar O-4 contig16310, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44838

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
433--489
25
2.4
25
88
5
82
31
5
3
59
1.36
2875--3092
24
9.1
24
84
6
237
24
11
32
31
1.92
3021--3068
15
3.6
15
69
30
54
25
8
33
33
1.86
5664--6374
355
2.0
353
90
4
1121
27
16
12
43
1.84
11376--11443
30
2.2
31
89
2
102
27
23
17
30
1.97
18473--18523
18
3.0
17
83
11
68
45
0
0
54
0.99
19686--19715
2
15.0
2
100
0
60
0
0
50
50
1.00
20587--20629
14
2.9
14
83
10
50
53
4
0
41
1.21
22744--22961
24
9.1
24
84
6
228
24
12
32
30
1.92
22774--22951
69
2.5
70
86
2
241
25
11
32
30
1.91
23995--24114
59
2.0
59
96
0
222
39
5
10
45
1.61
26629--26663
3
11.7
3
87
0
52
68
5
0
25
1.11
26628--26666
6
6.5
6
81
0
51
66
10
0
23
1.22
26628--26666
12
3.2
12
100
0
78
66
10
0
23
1.22
33254--33323
36
1.9
36
97
0
131
38
11
17
32
1.85
36895--36919
13
1.9
13
100
0
50
48
0
0
52
1.00
38684--38860
88
2.0
88
98
0
345
18
21
23
36
1.95
39894--39971
18
4.6
17
69
23
58
14
6
51
28
1.66
39887--39982
48
2.0
48
97
0
183
14
7
52
26
1.68
40025--40075
18
2.8
18
77
11
59
17
3
50
27
1.63
44794--44831
2
19.0
2
100
0
76
50
0
0
50
1.00

Tables:   1

The End!