Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016278.1 Corchorus olitorius cultivar O-4 contig16311, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41347

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69--103
1
35.0
1
100
0
70
100
0
0
0
0.00
828--917
14
5.8
15
67
20
51
32
3
2
62
1.24
860--912
16
3.2
16
82
10
70
37
1
0
60
1.08
5051--5105
16
3.4
16
72
22
53
58
3
1
36
1.26
5051--5105
17
3.5
15
76
18
58
58
3
1
36
1.26
10589--10639
18
2.6
20
82
14
54
13
5
56
23
1.59
10580--10642
21
3.0
21
77
20
60
15
4
55
23
1.59
10540--10800
126
2.1
126
80
0
297
16
7
50
26
1.70
11155--11193
18
2.2
18
85
0
51
7
0
61
30
1.24
14343--14538
66
3.0
66
89
4
326
15
23
22
38
1.92
14335--14527
63
3.0
63
90
4
323
15
22
23
38
1.92
18078--18129
23
2.3
23
80
9
61
48
38
5
7
1.56
23601--23652
25
2.1
25
100
0
104
50
9
26
13
1.72
27151--27210
23
2.4
26
72
10
63
40
11
1
46
1.50
27216--27259
23
1.9
23
81
9
54
25
13
0
61
1.32
27057--27268
102
2.0
107
86
11
303
33
12
2
50
1.53
31094--31147
21
2.7
19
80
5
63
29
18
11
40
1.85
35127--35171
2
24.0
2
86
13
69
53
0
0
46
1.00
35127--35171
13
3.5
13
100
0
90
53
0
0
46
1.00

Tables:   1

The End!