Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016279.1 Corchorus olitorius cultivar O-4 contig16312, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42408

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
921--1092
22
7.9
22
72
14
124
39
9
14
36
1.78
924--1092
44
3.9
44
78
9
152
39
9
13
37
1.77
4916--4975
24
2.3
27
86
8
81
48
18
0
33
1.48
4958--5017
31
1.9
31
83
6
77
48
16
5
30
1.67
17572--17618
15
2.9
16
90
9
78
23
0
0
76
0.78
19111--19141
2
15.5
2
100
0
62
48
0
0
51
1.00
33884--33922
13
2.8
14
88
11
62
71
5
10
12
1.28
37238--37348
55
2.0
55
100
0
222
9
1
37
51
1.44
40893--40973
39
2.0
40
92
2
137
50
8
3
37
1.51

Tables:   1

The End!