Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016282.1 Corchorus olitorius cultivar O-4 contig16315, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2506
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.39

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:2260 original size:167 final size:170

Alignment explanation


    Indices: 1865--2279  Score: 416
    Period size: 167  Copynumber: 2.5  Consensus size: 170

       1855 TAATTTTATT

                          *             *         *   **                     
       1865 TGTCCGATTAAAATGATTCAAGTGTCA-CTTAAAAGGTAATTTTATGATCTACAACTTTCATGAA
          1 TGTCCGATTAAAATTATTCAAGTGTCAGATTAAAAGGTTATTCCATGATCTACAACTTTCATGAA

                                       *         *             *             
       1929 GGACTCAAAAACTAATTTTTATATTTCGAGTCTAAAACATGCTTTCGAAATTTGGCGGTTTCAAT
         66 GGACTCAAAAACTAATTTTTATATTTCCAGTCTAAAAAATGCTTTCGAAATCTGGCGGTTTCAAT

                                           *    * * 
       1994 TAACGGTCTATTTAAAATGATATATAATTTTTGATCTAGA
        131 TAACGGTCTATTTAAAATGATATATAATTTTCGATCCACA

                  *                   *   *     *  *            **           
       2034 TGTCCGGTTAAAATTATTCAAGTG-CCGATCAAAAGATTGTTCCATGATCTATTACTTTCATGAA
          1 TGTCCGATTAAAATTATTCAAGTGTCAGATTAAAAGGTTATTCCATGATCTACAACTTTCATGAA

               *     **           *      *                             *    *
       2098 GGATTCAAAGTC-AATTTTTATGTTTCCATTC-AAAAAATGC-TTCTGAAATCTGTG-GTTTTCG
         66 GGACTCAAAAACTAATTTTTATATTTCCAGTCTAAAAAATGCTTTC-GAAATCTG-GCGGTTTCA

                *             *                         
       2159 ATT-GCTGGTCTATTT-ATAT-ATCATATAATTTTCGATCCACA
        129 ATTAAC-GGTCTATTTAAAATGAT-ATATAATTTTCGATCCACA

                 *      *     *         *             *          *           
       2200 TGTCCAATTAAAGTTATTTAAGTGTCAGGTTAAAAGGTTATTGCATGATCTACGACTTTCATGAA
          1 TGTCCGATTAAAATTATTCAAGTGTCAGATTAAAAGGTTATTCCATGATCTACAACTTTCATGAA

                  *   *    
       2265 GGACTCGAAAGCTAA
         66 GGACTCAAAAACTAA

       2280 ATTTGATCTA


Statistics
Matches: 196,  Mismatches: 43, Indels: 15
        0.77            0.17        0.06

Matches are distributed among these distances:
 165    2  0.01
 166   43  0.22
 167   72  0.37
 168   20  0.10
 169   59  0.30

ACGTcount: A:0.33, C:0.14, G:0.15, T:0.38


Consensus pattern (170 bp):   
TGTCCGATTAAAATTATTCAAGTGTCAGATTAAAAGGTTATTCCATGATCTACAACTTTCATGAA
GGACTCAAAAACTAATTTTTATATTTCCAGTCTAAAAAATGCTTTCGAAATCTGGCGGTTTCAAT
TAACGGTCTATTTAAAATGATATATAATTTTCGATCCACA
Done.