Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016283.1 Corchorus olitorius cultivar O-4 contig16316, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15291

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1637--1730
38
2.5
38
89
8
140
45
4
8
41
1.54
1662--1730
13
5.2
13
72
19
54
44
4
8
42
1.55
1637--1700
19
3.4
19
73
2
67
46
4
7
40
1.53
5871--5901
2
15.5
2
93
0
53
45
3
0
51
1.17
6817--6923
41
2.6
39
77
12
117
46
2
0
50
1.16
7755--7824
32
2.2
32
84
5
88
17
11
32
38
1.85
8024--8056
17
1.9
17
93
0
57
3
12
33
51
1.54
8011--8070
23
2.7
23
89
2
86
3
10
33
53
1.51
9697--9725
3
10.0
3
92
7
51
65
0
0
34
0.93
10094--10170
22
3.5
22
80
1
84
41
12
6
38
1.69
10090--10192
43
2.4
44
85
1
127
41
13
7
36
1.73
13160--13258
22
4.5
22
77
9
96
40
11
9
39
1.72
13160--13283
44
2.8
45
84
4
148
38
12
8
41
1.72
13193--13286
21
4.3
22
75
16
79
38
14
5
41
1.69
14090--14117
12
2.3
12
100
0
56
60
0
0
39
0.97
14875--15026
75
2.0
75
98
0
295
20
9
31
38
1.84
15163--15208
24
1.9
23
83
16
58
54
2
10
32
1.47

Tables:   1

The End!