Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016284.1 Corchorus olitorius cultivar O-4 contig16317, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  126183

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
121--163
18
2.2
20
84
12
63
41
4
11
41
1.62
4075--4133
29
2.0
29
87
6
84
10
22
6
61
1.51
11796--11842
22
2.1
22
84
7
60
61
2
12
23
1.42
11719--11897
93
1.9
93
90
0
286
49
1
14
34
1.53
12880--13043
85
1.9
82
87
8
238
51
2
10
35
1.49
29994--30026
2
16.5
2
100
0
66
51
0
0
48
1.00
30292--30325
14
2.4
14
95
0
59
23
8
0
67
1.18
31316--31344
4
7.2
4
100
0
58
24
0
0
75
0.80
42019--42265
80
3.0
80
89
8
390
43
17
10
28
1.82
42071--42243
86
2.0
88
95
2
314
43
17
10
27
1.83
46872--46944
32
2.3
32
90
4
121
20
27
24
27
1.99
49131--49222
27
3.3
30
86
8
115
17
42
20
19
1.89
51593--51834
32
7.5
32
95
0
403
33
24
18
23
1.97
60220--60254
2
17.5
2
100
0
70
48
0
0
51
1.00
63628--63700
35
2.1
35
89
0
110
10
8
30
50
1.66
64156--64451
159
1.9
155
87
5
434
41
21
10
26
1.85
65222--65248
14
1.9
14
100
0
54
37
18
29
14
1.91
67337--67410
2
34.0
2
84
15
94
45
8
0
45
1.32
67337--67410
7
11.3
7
98
1
113
45
8
0
45
1.32
67408--67441
3
11.3
3
100
0
68
67
0
0
32
0.91
69360--69409
17
2.8
17
87
6
73
38
6
8
48
1.57
70069--70106
3
12.7
3
100
0
76
65
0
0
34
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71777--72086
103
3.0
104
82
7
346
41
6
10
41
1.65
71815--72091
103
2.7
104
83
7
357
41
7
9
41
1.65
73413--73481
35
2.0
35
91
5
113
4
13
28
53
1.58
77544--77729
93
2.0
93
88
1
273
52
3
12
31
1.55
80945--81033
43
2.1
43
100
0
178
34
15
8
40
1.79
81633--81749
61
1.9
61
84
8
159
33
16
16
34
1.91
81605--81760
60
2.6
60
78
12
176
29
16
19
34
1.94
84516--84556
2
21.5
2
81
18
52
48
2
0
48
1.14
84512--84571
26
2.3
26
82
5
77
43
3
1
51
1.28
92496--92541
2
24.5
2
79
20
55
50
2
0
47
1.13
92496--92541
9
4.9
10
78
21
55
50
2
0
47
1.13
99866--99914
2
25.0
2
87
4
73
44
4
0
51
1.20
102512--102542
4
8.0
4
92
7
55
0
22
0
77
0.77
107236--107271
18
2.0
18
94
0
63
38
25
22
13
1.91
109176--109203
2
14.0
2
100
0
56
50
0
0
50
1.00
118377--118416
17
2.3
18
86
4
55
42
7
22
27
1.80
119501--119620
60
2.0
60
96
0
222
18
24
30
26
1.98

Tables:   1

The End!