Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016286.1 Corchorus olitorius cultivar O-4 contig16319, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59813

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6935--6979
21
2.2
21
84
4
56
44
11
0
44
1.39
7726--7819
45
2.2
44
88
7
140
37
21
6
35
1.79
29484--29542
31
1.9
30
93
3
100
49
10
13
27
1.74
31958--32006
16
3.1
16
82
2
55
51
2
2
44
1.24
32255--32504
125
1.9
127
88
7
380
50
2
10
36
1.51
42211--42274
32
2.0
32
100
0
128
15
18
12
53
1.73
42248--42297
25
2.0
25
96
0
91
18
18
12
52
1.75
47983--48044
32
1.9
33
87
6
92
24
20
27
27
1.99
48718--55928
318
22.8
320
77
9
6208
29
17
11
42
1.83
56038--56846
305
2.6
303
78
6
838
29
14
11
44
1.81
56865--57030
60
2.8
60
85
7
221
34
20
17
27
1.95
59703--59739
2
18.5
2
100
0
74
51
0
0
48
1.00

Tables:   1

The End!