genome.fa.s16288.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016288.1 Corchorus olitorius cultivar O-4 contig16321, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  256043

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4146--4210	32	2.0	32	87	0	94	35	20	13	30	1.91
6732--7190	216	2.1	215	88	3	701	41	16	16	25	1.89
7787--7841	28	2.0	28	85	0	74	63	9	5	21	1.44
18383--18438	29	1.9	30	85	3	78	26	8	1	62	1.35
18543--18572	15	1.9	16	93	6	53	43	0	3	53	1.17
19090--20278	324	3.6	322	79	7	1149	32	15	14	37	1.88
19177--20558	660	2.1	658	77	10	1357	33	15	15	36	1.89
20558--22067	333	4.6	330	83	4	1786	31	15	16	37	1.89
20558--22059	670	2.3	655	87	5	2094	31	15	16	37	1.89
22467--22538	37	1.9	37	97	0	135	34	11	25	29	1.90
22757--22879	62	2.1	57	86	7	165	42	25	7	25	1.80
22714--22879	57	2.9	56	73	17	160	40	24	9	25	1.84
23051--23857	332	2.4	330	83	6	972	34	13	16	36	1.87
28689--32410	332	11.3	331	79	6	3306	37	14	14	33	1.87
32758--32787	15	1.9	16	93	6	53	53	3	0	43	1.17
34112--34187	30	2.6	29	77	10	82	30	23	10	35	1.89
37396--37422	13	2.1	13	100	0	54	44	25	14	14	1.84
37478--38103	322	2.0	320	84	1	824	38	15	12	32	1.86
42788--42821	16	2.2	16	89	5	52	47	2	8	41	1.50
50624--50665	21	2.0	21	86	9	59	23	23	4	47	1.70
59917--59997	40	2.0	41	85	2	110	29	11	18	40	1.85
61136--61397	107	2.5	105	91	2	411	40	8	9	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61591--61621	2	16.0	2	93	6	55	51	0	0	48	1.00
74821--74857	19	2.0	19	94	5	67	32	0	0	67	0.91
74827--74868	19	2.2	19	86	0	57	38	2	0	59	1.10
76414--76488	37	2.0	37	100	0	150	29	17	21	32	1.96
77572--77677	19	5.3	20	68	13	85	30	26	15	28	1.96
77596--77662	21	3.3	21	66	16	59	31	26	14	26	1.95
77572--77672	40	2.5	40	95	0	184	28	27	15	27	1.96
85260--85294	18	1.9	18	94	0	61	51	11	8	28	1.67
85422--85453	16	2.0	16	93	0	55	46	0	0	53	1.00
85422--85469	18	2.5	19	83	10	62	52	0	0	47	1.00
85495--85569	35	2.1	35	97	0	141	41	18	18	21	1.91
86600--87351	111	6.8	111	82	4	760	28	18	18	35	1.94
86600--87282	221	3.1	220	82	8	746	28	18	17	35	1.94
87879--87916	20	1.9	20	88	0	58	36	5	2	55	1.37
88854--88911	19	3.1	19	90	5	100	56	13	5	24	1.57
88859--88917	18	3.2	18	90	4	100	57	11	5	25	1.54
101543--101592	24	2.2	23	82	7	57	12	26	2	60	1.43
102471--102695	107	2.1	108	88	0	344	41	8	8	41	1.67
102750--102789	21	1.9	21	84	0	53	72	2	22	2	1.09
105672--105716	5	9.0	5	90	0	72	0	44	0	55	0.99
105801--105833	17	1.9	17	100	0	66	33	36	18	12	1.88
106079--106132	2	27.5	2	89	10	85	50	1	0	48	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109374--109415	6	6.8	6	84	10	50	80	0	14	4	0.86
109420--109513	45	2.1	45	94	4	163	26	23	2	47	1.63
109492--109621	43	3.0	43	96	2	235	36	27	4	31	1.77
119966--120000	12	3.0	11	91	8	52	42	34	2	20	1.66
120171--120339	31	5.5	31	81	2	133	33	24	23	18	1.97
121470--121512	22	2.1	20	87	12	61	0	9	16	74	1.06
123739--123768	13	2.4	13	94	5	53	66	16	6	10	1.41
125848--125876	14	2.1	14	100	0	58	58	13	6	20	1.58
132170--132218	4	12.5	4	79	12	57	48	0	20	30	1.50
132170--132225	27	2.1	26	90	3	85	50	0	19	30	1.48
132224--132259	6	6.0	6	100	0	72	83	0	0	16	0.65
137062--137125	2	33.0	2	78	20	66	43	1	3	51	1.26
137055--137125	27	2.6	27	87	12	94	42	1	4	52	1.29
137057--137125	22	3.4	19	86	13	86	43	1	2	52	1.25
142934--143390	157	3.0	155	83	4	538	40	19	14	26	1.90
154386--154410	13	1.9	13	100	0	50	16	16	28	40	1.89
158415--158503	42	2.1	42	97	0	169	38	10	13	38	1.78
164806--164842	18	2.1	18	100	0	74	27	10	16	45	1.80
164849--164898	24	2.1	24	100	0	100	30	8	24	38	1.84
168965--169036	29	2.4	29	78	17	76	27	15	30	26	1.96
176629--176657	2	14.5	2	100	0	58	51	0	0	48	1.00
177428--177479	16	3.5	14	75	19	52	26	1	1	69	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
177439--177478	13	3.0	13	85	7	53	22	2	0	75	0.93
177540--177575	2	18.0	2	100	0	72	50	0	0	50	1.00
178143--178184	20	2.0	21	82	13	52	52	11	4	30	1.59
195293--195325	2	16.0	2	93	6	57	48	3	0	48	1.17
195541--195621	39	2.0	40	92	2	137	50	8	3	37	1.51
195721--196107	201	1.9	202	95	1	695	36	11	8	44	1.71
196503--196642	72	1.9	72	97	0	262	32	12	9	45	1.74
196696--196765	36	1.9	36	91	5	115	62	5	11	20	1.48
202737--202781	21	2.1	22	83	4	56	13	37	11	37	1.80
209617--209660	23	1.9	23	85	0	61	4	9	11	75	1.19
210926--210958	16	2.0	17	94	5	59	0	9	6	84	0.76
211179--211235	30	1.9	30	96	0	105	15	14	12	57	1.65
214440--214519	28	2.9	28	81	1	108	41	13	6	38	1.70
215558--215592	18	1.9	18	94	0	61	37	40	8	14	1.76
217665--217689	10	2.5	10	100	0	50	28	8	28	36	1.85
226489--226516	4	7.0	4	100	0	56	75	0	25	0	0.81
253262--254887	331	4.9	332	78	5	1426	33	14	15	36	1.88
254466--255426	531	1.8	522	84	4	1302	31	16	15	35	1.90
254939--256040	334	3.3	332	88	4	1604	32	16	15	35	1.90

Tables:   1

The End!